# Reference Atlases **URL:** https://community.brain-map.org/c/how-to/reference-atlases/23.md [Latest](https://community.brain-map.org/latest.md) · [Categories](https://community.brain-map.org/categories.md) · [Tags](https://community.brain-map.org/tags.md) --- ## [Allen reference atlases and viewing tools](https://community.brain-map.org/t/allen-reference-atlases-and-viewing-tools/2767)
**Author:** [@tylermo](https://community.brain-map.org/u/tylermo)\ **Replies:** 0
This is the online help for the ALLEN Reference Atlases and the web-based tools that can be used to access them. The reference atlases are neuroanatomical guides to accompany Allen Institute data and are also useful as s… --- ## [Assistance Needed: Mapping Cell Registration IDs to CCF Coordinates in Reference Space](https://community.brain-map.org/t/assistance-needed-mapping-cell-registration-ids-to-ccf-coordinates-in-reference-space/3948)
**Author:** [@CRYPTOCHROME384](https://community.brain-map.org/u/CRYPTOCHROME384)\ **Replies:** 4\ **Last updated:** [December 16, 2024, 5:53pm UTC](https://community.brain-map.org/t/assistance-needed-mapping-cell-registration-ids-to-ccf-coordinates-in-reference-space/3948 "2024-12-16T17:53:28Z")
Hello Allen Brain Observatory Support Team, I am currently working with two-photon imaging data from the Allen Brain Observatory and have successfully got nwb files of neurons across multiple mice. My goal is to map the… --- ## [‘merge requests’ into the Allen Mouse Brain Annotation Atlas](https://community.brain-map.org/t/merge-requests-into-the-allen-mouse-brain-annotation-atlas/3311)
**Author:** [@dkeller](https://community.brain-map.org/u/dkeller)\ **Replies:** 3\ **Last updated:** [May 8, 2024, 9:14am UTC](https://community.brain-map.org/t/merge-requests-into-the-allen-mouse-brain-annotation-atlas/3311 "2024-05-08T09:14:49Z")
We have developed several enhancements to the CCFv3 atlas, which may be of interest to the broader community. Is there a way to perform a ‘merge request’ back into the Allen Mouse Brain Annotation atlas? --- ## [Adult Mouse Brain Reference Atlas](https://community.brain-map.org/t/adult-mouse-brain-reference-atlas/2768)
**Author:** [@tylermo](https://community.brain-map.org/u/tylermo)\ **Replies:** 0\ **Last updated:** [December 8, 2023, 7:07pm UTC](https://community.brain-map.org/t/adult-mouse-brain-reference-atlas/2768 "2023-12-08T19:07:24Z")
Reference Atlases Adult, 3-D Coronal P56, 2-D Atlases Reference Atlas Viewing Tools Reference Atlases The Allen Reference Atlases are designed to: Allow users to directly compare data to neuroanatomical structures… --- ## [Mouse Spinal Cord Reference Atlases](https://community.brain-map.org/t/mouse-spinal-cord-reference-atlases/3031)
**Author:** [@rachel.hostetler](https://community.brain-map.org/u/rachel.hostetler)\ **Replies:** 0\ **Last updated:** [February 3, 2024, 12:12am UTC](https://community.brain-map.org/t/mouse-spinal-cord-reference-atlases/3031 "2024-02-03T00:12:20Z")
MOUSE SPINAL CORD REFERENCE ATLASES Reference Atlases Age P4 Age P56 Reference Atlas Viewing Tools Reference Atlases These anatomical reference atlases illustrate the mouse spinal cord in adult and juvenile C57BL/6J… --- ## [BrainSpan Atlas of the Developing Human](https://community.brain-map.org/t/brainspan-atlas-of-the-developing-human/3030)
**Author:** [@rachel.hostetler](https://community.brain-map.org/u/rachel.hostetler)\ **Replies:** 0\ **Last updated:** [February 3, 2024, 12:00am UTC](https://community.brain-map.org/t/brainspan-atlas-of-the-developing-human/3030 "2024-02-03T00:00:14Z")
DEVELOPING HUMAN REFERENCE ATLASES Reference Atlases Reference Atlas Viewing Tools Reference Atlases To complement the RNA-Seq and microarray gene expression data, reference atlases were created at three developmental … --- ## [Allen Developing Mouse Brain Reference Atlas](https://community.brain-map.org/t/allen-developing-mouse-brain-reference-atlas/3029)
**Author:** [@rachel.hostetler](https://community.brain-map.org/u/rachel.hostetler)\ **Replies:** 0\ **Last updated:** [February 2, 2024, 11:29pm UTC](https://community.brain-map.org/t/allen-developing-mouse-brain-reference-atlas/3029 "2024-02-02T23:29:59Z")
Reference Datasets Translation Between the Adult and Developing Mouse Ontologies Reference Atlas Viewing with Gene Expression Data Structure Ontology Ontology Levels Reference Atlas Viewing Tools Reference Datase… --- ## [Allen Human Brain Reference Atlas](https://community.brain-map.org/t/allen-human-brain-reference-atlas/3022)
**Author:** [@rachel.hostetler](https://community.brain-map.org/u/rachel.hostetler)\ **Replies:** 0\ **Last updated:** [February 1, 2024, 10:16pm UTC](https://community.brain-map.org/t/allen-human-brain-reference-atlas/3022 "2024-02-01T22:16:47Z")
ADULT HUMAN BRAIN ATLASES Reference Atlases Modified Brodmann Gyral Neuroanatomic Reference Guide Reference Atlas Viewing Tools Reference Atlases These anatomical reference atlases illustrate the adult human brain, … --- ## [Reference Atlas Viewing Tools](https://community.brain-map.org/t/reference-atlas-viewing-tools/2853)
**Author:** [@SvenOtto](https://community.brain-map.org/u/SvenOtto)\ **Replies:** 0\ **Last updated:** [January 5, 2024, 10:38pm UTC](https://community.brain-map.org/t/reference-atlas-viewing-tools/2853 "2024-01-05T22:38:44Z")
Interactive Atlas Viewer (IAV) Accessing the Interactive Atlas Viewer Using the Interactive Atlas Viewer Structure Hierarchy Image viewer Drop-Down Menus Zoom And Pan (ZAP) Image Viewer Scale Bar Keyboard Commands …