# Connected Services and Pipes - Part I **URL:** \ **Category:** Allen Brain Atlas API\ **Created:** [January 8, 2024, 3:59pm UTC](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861 "2024-01-08T15:59:03Z")\ **Posts on this page:** 1\ **Page:** 1
**Author:** ![SvenOtto](https://yyz1.discourse-cdn.com/flex027/user_avatar/community.brain-map.org/svenotto/32/893_2.png) [@SvenOtto](https://community.brain-map.org/u/SvenOtto)\ **Post date:** [January 8, 2024, 3:59pm UTC](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861/1 "2024-01-08T15:59:03Z")
- [service::dev\_human\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_human_correlation-1) - [service::dev\_human\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_human_differential-4) - [service::dev\_human\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_human_expression-7) - [service::dev\_human\_microarray\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_human_microarray_correlation-10) - [service::dev\_human\_microarray\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_human_microarray_differential-13) - [service::dev\_human\_microarray\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_human_microarray_expression-16) - [service::dev\_mouse\_agea](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_mouse_agea-19) - [service::dev\_mouse\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicedev_mouse_correlation-22) - [service::gbm\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicegbm_correlation-25) - [service::gbm\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicegbm_differential-28) - [service::gbm\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicegbm_expression-31) - [service::gbm\_ish\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicegbm_ish_differential-34) - [service::gbm\_ish\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicegbm_ish_expression-37) - [service::human\_microarray\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicehuman_microarray_correlation-40) - [service::human\_microarray\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicehuman_microarray_differential-43) - [service::human\_microarray\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicehuman_microarray_expression-46) - [service::mouse\_agea](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_agea-49) - [service::mouse\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_correlation-52) - [service::mouse\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_differential-55) - [service::mouse\_connectivity\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_connectivity_correlation-58) - [service::mouse\_connectivity\_injection\_coordinate](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_connectivity_injection_coordinate-61) - [service::mouse\_connectivity\_injection\_structure](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_connectivity_injection_structure-64) - [service::mouse\_connectivity\_target\_spatial](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicemouse_connectivity_target_spatial-67) - [service::nhp\_lmd\_microarray\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicenhp_lmd_microarray_correlation-70) - [service::nhp\_lmd\_microarray\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicenhp_lmd_microarray_differential-73) - [service::nhp\_lmd\_microarray\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicenhp_lmd_microarray_expression-76) - [service::nhp\_macro\_microarray\_correlation](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicenhp_macro_microarray_correlation-79) - [service::nhp\_macro\_microarray\_differential](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicenhp_macro_microarray_differential-82) - [service::nhp\_macro\_microarray\_expression](https://community.brain-map.org/t/connected-services-and-pipes-part-i/2861#servicenhp_macro_microarray_expression-85) ## service::dev\_human\_correlation ### Parameters | set | String | Data set name: rna\_seq\_genes, rna\_seq\_exons, exon\_microarray\_genes or exon\_microarray\_exons | | --- | --- | --- | | donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures | Array | Comma delimited list of Structure.id or Structure.acronym. | | probes | Integer | Probe id to correlate against. | | sort\_order | String (optional) | ‘asc’ for ascending order, or ‘desc’ for descending order. Defaults to descending. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqrna_seq_genes][probes$eq1090294][structures$eq'CBC'] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqrna_seq_exons][probes$eq279330730][structures$eq'CBC'] Retrieve exon_microarray_genes correlation values for structure with the acronym, "CBC". http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqexon_microarray_genes][probes$eq9463][structures$eq'CBC'] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_correlation[set$eqexon_microarray_exons][probes$eq280550735][structures$eq'CBC'] ``` ## service::dev\_human\_differential ### Parameters | set | String | Data set name: rna\_seq\_genes, rna\_seq\_exons, exon\_microarray\_genes or exon\_microarray\_exons | | --- | --- | --- | | donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures1 | Array | Comma delimited list of Structure.id. | | donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures2 | Array | Comma delimited list of Structure.id. | | sort\_by | String (optional) | ‘p-value’ or ‘fold-change’. Defaults to ‘p-value’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'rna_seq_genes'][structures1$eqDFC][structures2$eqMFC] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'rna_seq_genes'][structures1$eqDFC][structures2$eqMFC] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'exon_microarray_exons'][structures1$eqDFC][structures2$eqMFC] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_differential[set$eq'exon_microarray_genes'][structures1$eqDFC][structures2$eqMFC] ``` ## service::dev\_human\_expression ### Parameters | set | String | Data set name: rna\_seq\_genes, rna\_seq\_exons, exon\_microarray\_genes or exon\_microarray\_exons | | --- | --- | --- | | probes | Integer | Probe.id to correlate against | | donors | Integer (optional) | Comma delimited list of Donor.id to filter expression results. | | structures | Integer (optional) | Comma delimited list of Stucture.id to filter expression results. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'rna_seq_genes'][probes$eq1090294] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'rna_seq_exons'][probes$eq279330730] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'exon_microarray_genes'][probes$eq9463] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_expression[set$eq'exon_microarray_exons'][probes$eq280550735] ``` ## service::dev\_human\_microarray\_correlation ### Parameters | donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures | Array | Comma delimited list of Structure.id or Structure.acronym. | | probes | Integer | Probe id to correlate against | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘desc’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_microarray_correlation[probes$eq1048426][structures$eqSG] ``` ## service::dev\_human\_microarray\_differential ### Parameters | donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures1 | Array | Comma delimited list of Structure.id. | | donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures2 | Array | Comma delimited list of Structure.id. | | sort\_by | String (optional) | ‘p-value’ or ‘fold-change’. Defaults to ‘p-value’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_microarray_differential[structures1$eqMZ][structures2$eqCP] ``` ## service::dev\_human\_microarray\_expression ### Parameters | probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. | | --- | --- | --- | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | | donors | Integer (optional) | Comma delimited list of Donor.id to filter microarray expression results. | | structures | Integer (optional) | Comma delimited list of Structure.id to filter microarray expression results. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_human_microarray_expression[probes$eq1053223,1053224][donors$eq12566][structures$eq11587] ``` ## service::dev\_mouse\_agea ### Parameters | seed\_age | String | Age.id | | --- | --- | --- | | map\_age | String | Age.id | | seed\_point | Array | Comma delimited list of integers representing a point in the age’s space. | | seed\_threshold | Array | Pair of floating point values representing the correlation seed age threshold. | | map\_threshold | Array | Pair of floating point values representing the correlation map age threshold. | | contrast\_threshold | Array (optional) | Pair of integer values representing the contrast domain threshold. | | target\_threshold | Array (optional) | Pair of integer values representing the target domain threshold. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_mouse_agea[seed_age$eq'E18.5'][map_age$eq'E15.5'][seed_point$eq4200,2380,2360] [map_threshold$eq0.467,0.657][seed_threshold$eq0.811,0.924] ``` ## service::dev\_mouse\_correlation ### Parameters | row | Integer | DataSet.id or Gene.id to correlate against. | | --- | --- | --- | | structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | ages | Array (optional) | Comma delimited list of Age.name. | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘desc’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::dev_mouse_correlation[row$eq13267][structures$eq'NP'][ages$eq'P14','P28'] ``` ## service::gbm\_correlation ### Parameters | donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures | Array | Comma delimited list of Structure.id or Structure.acronym. | | probes | Integer | Probe id to correlate against | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘desc’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_correlation[probes$eq3551][structures$eqGBM] ``` ## service::gbm\_differential ### Parameters | donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures1 | Array | Comma delimited list of Structure.id. | | donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures2 | Array | Comma delimited list of Structure.id. | | sort\_by | String (optional) | ‘p-value’ or ‘fold-change’. Defaults to ‘p-value’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_differential[structures1$eqGBM][structures2$eqCTpan] ``` ## service::gbm\_expression ### Parameters | probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. | | --- | --- | --- | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | | donors | Integer (optional) | Comma delimited list of Donor.id to filter gbm expression results. | | structures | Integer (optional) | Comma delimited list of Structure.id to filter gbm expression results. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_expression[probes$eq3551][donors$eq703393][structures$eqGBM] ``` ## service::gbm\_ish\_differential ### Parameters | structures1 | Array | Comma delimited list of Structure.id. | | --- | --- | --- | | structures2 | Array | Comma delimited list of Structure.id. | | threshold1 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 1. | | threshold2 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 2. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_ish_differential[structures1$eqCTpnn][structures2$eqIT] ``` ## service::gbm\_ish\_expression ### Parameters | structures | Array | Comma delimited list of Structure.id. | | --- | --- | --- | | threshold | Array (optional) | Comma delimited Integer pair indicating thresholds. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::gbm_ish_expression[structures$eqCTpnn][threshold$eq0,100000] ``` ## service::human\_microarray\_correlation ### Parameters | donors | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures | Array | Comma delimited list of Structure.id or Structure.acronym. | | probes | Integer | Probe.id to correlate against. | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘desc’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::human_microarray_correlation[probes$eq1048426][structures$eq'FL'] ``` ## service::human\_microarray\_differential ### Parameters | donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures1 | Array | Comma delimited list of Structure.id. | | donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures2 | Array | Comma delimited list of Structure.id. | | sort\_by | String | ‘p-value’ or ‘fold-change’. Defaults to ‘p-value’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::human_microarray_differential[structures1$eq4005][structures2$eq4006] ``` ## service::human\_microarray\_expression ### Parameters | probes | Integer | Comma delimited list of Probe.id to filter microarray expression results. | | --- | --- | --- | | donors | Integer (optional) | Comma delimited list of Donor.id to filter microarray expression results. | | structures | Integer (optional) | Comma delimited list of Stucture.id to filter microarray expression results. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::human_microarray_expression[probes$eq1014952][donors$eq9861,10021][structures$eq4079] ``` ## service::mouse\_agea ### Parameters | set | String | Data set name: mouse\_coronal. | | --- | --- | --- | | seed\_age | String | An age identifier. P56. | | map\_age | String | An age identifier. P56. | | seed\_point | Array | A comma delimited triple indicating the coordinates of a point in 3-D SectionDataSet space. | | correlation\_threshold1 | Float (optional) | Correlation threshold for domain 1. | | correlation\_threshold2 | Float (optional) | Correlation threshold for domain 2. | | threshold1 | Array (optional) | Comma delimited Integer pair defining the threshold for domain 1. | | threshold2 | Array (optional) | Comma delimited Integer pair defining the threshold for domain 2. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_agea[set$eqmouse_coronal][seed_age$eqP56][map_age$eqP56][seed_point$eq6800,4200,5600] [correlation_threshold1$eq0.84][correlation_threshold2$eq0.93] ``` ## service::mouse\_correlation ### Parameters | set | String | Data set name: mouse or mouse\_coronal. | | --- | --- | --- | | structures | Array (optional) | Comma delimited list of Structure.id or Structure.acronym. | | row | Integer | DataSet.id to correlate against. | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘desc’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_correlation[set$eqmouse][row$eq68918934] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_correlation[set$eqmouse_coronal][row$eq357096] ``` ## service::mouse\_differential ### Parameters | set | String | Data set name: mouse or mouse\_coronal. | | --- | --- | --- | | structures1 | Array | Comma delimited list of Structure.id. | | structures2 | Array | Comma delimited list of Structure.id. | | threshold1 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 1. | | threshold2 | Array (optional) | Comma delimited Integer pair indicating thresholds for domain 2. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_differential[set$eq'mouse'][structures1$eq8][structures2$eq315] http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_differential[set$eq'mouse_coronal'][structures1$eq8][structures2$eq315] ``` ## service::mouse\_connectivity\_correlation ### Parameters | row | Integer | SectionDataSet.id to correlate against. | | --- | --- | --- | | structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | hemisphere | String (optional) | Structure’s hemisphere. Use ‘Right’ or ‘Left’. Defaults to both hemispheres. | | transgenic\_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. | | injection\_structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | primary\_structure\_only | String (optional) | ‘true’ or ‘false’ | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘desc’. | | product\_ids | Array (optional) | Comma delimited list of Integer Product.ids. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_correlation[row$eq112162251][structures$eqTH][hemisphere$eqright][num_rows$eq100][transgenic_lines$eq0,177838259] ``` ## service::mouse\_connectivity\_injection\_coordinate Search for injection sites near a set of 3-D coordinates, ranking the results by their distance from the coordinates. ### Parameters | seed\_point | Array | A comma delimited triple indicating the coordinates of a point in 3-D space. | | --- | --- | --- | | transgenic\_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. | | injection\_structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | primary\_structure\_only | String (optional) | ‘true’ or ‘false’ | | product\_ids | Array (optional) | Comma delimited list of Integer Product.ids. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_injection_coordinate[seed_point$eq6600,5400,4800][transgenic_lines$eq0] ``` ## service::mouse\_connectivity\_injection\_structure Search by injection structures, ranking the results the results by signal in the target structures. ### Parameters | injection\_structures | Array | Comma delimited list of Integer Structure.id or String Structure.acronym. | | --- | --- | --- | | target\_domain | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | injection\_hemisphere | String (optional) | ‘Right’ or ‘Left’. Defaults to both hemispheres. | | target\_hemisphere | String (optional) | ‘Right’ or ‘Left’. Defaults to both hemispheres. | | transgenic\_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. | | injection\_domain | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | primary\_structure\_only | String (optional) | ‘true’ or ‘false’ | | product\_ids | Array (optional) | Comma delimited list of Integer Product.ids. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_injection_structure[injection_structures$eqTH][injection_hemisphere$eqRight][target_domain$eqVIS][target_hemisphere$eqRight][transgenic_lines$eq0] ``` ## service::mouse\_connectivity\_target\_spatial Displays all SectionDataSets with projection signal density \>= 0.1 at the seed point. This service also returns the path along the most dense pixels from the seed point to the center of each injection site. ### Parameters | seed\_point | Array | A comma delimited triple indicating the coordinates of a point in 3-D SectionDataSet space. | | --- | --- | --- | | transgenic\_lines | Array (optional) | Comma delimited list of Integer TransgenicLine.id or String TransgenicLine.name. Specify ID 0 to exclude all TransgenicLines. | | section\_data\_set | Integer (optional) | SectionDataSet.id to filter the results. | | injection\_structures | Array (optional) | Comma delimited list of Integer Structure.id or String Structure.acronym. | | primary\_structure\_only | String (optional) | ‘true’ or ‘false’ | | product\_ids | Array (optional) | Comma delimited list of Integer Product.ids. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::mouse_connectivity_target_spatial[seed_point$eq6600,5400,4800][start_row$eq25][num_rows$eq50] ``` ## service::nhp\_lmd\_microarray\_correlation ### Parameters | donors | Array (optional) | comma separated list of integers Donor ids. Defaults to all donors. | | --- | --- | --- | | structures | Array | Comma delimited list of Structure.id. | | probes | Integer | Probe.id to correlate against. | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘asc’. | | start\_row | Integer (optional) | starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_lmd_microarray_correlation[probes$eq30357][structures$eqBN] ``` ## service::nhp\_lmd\_microarray\_differential ### Parameters | donors1 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | --- | --- | --- | | structures1 | Array | Comma delimited list of Structure.id. | | donors2 | Array (optional) | Comma delimited list of Donor.id. Defaults to all donors. | | structures2 | Array | Comma delimited list of Structure.id. | | sort\_by | String (optional) | ‘p-value’ or ‘fold-change’. Defaults to ‘p-value’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_lmd_microarray_differential[structures1$eqHF][structures2$eqBN] ``` ## service::nhp\_lmd\_microarray\_expression ### Parameters | probes | Integer | Probe.id to correlate against. | | --- | --- | --- | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_lmd_microarray_expression[probes$eq15815] ``` ## service::nhp\_macro\_microarray\_correlation ### Parameters | donors | Array (optional) | Donor.id. Defaults to all donors. | | --- | --- | --- | | structures | Array | Comma delimited list of Structure.id. | | probes | Integer | Probe.id to correlate against. | | sort\_order | String (optional) | ‘asc’ or ‘desc’. Defaults to ‘asc’. | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_macro_microarray_correlation[probes$eq49067][structures$eqBN] ``` ## service::nhp\_macro\_microarray\_differential ### Parameters | donors1 | Array (optional) | Donor.id. Defaults to all donors. | | --- | --- | --- | | structures1 | Array | Comma delimited list of Structure.id. | | donors2 | Array (optional) | Donor.id. Defaults to all donors. | | structures2 | Array | Comma delimited list of Structure.id. | | sort\_by | String (optional) | ‘p-value’ or ‘fold-change’. Defaults to ‘p-value’. | | start\_row | Integer (optional) | starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Examples ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_macro_microarray_differential[structures1$eqHF][structures2$eqBN] ``` ## service::nhp\_macro\_microarray\_expression ### Parameters | probes | Integer | Probe.id to correlate against. | | --- | --- | --- | | start\_row | Integer (optional) | Starting row of data for paging purposes. Defaults to 0. | | num\_rows | Integer (optional) | Number of rows of data for paging purposes. Defaults to 2000. | ### Example ```auto http://api.brain-map.org/api/v2/data/query.xml?criteria= service::nhp_macro_microarray_expression[probes$eq15815] ```