# How to: Allen Mouse Brain Atlas

**URL:** https://community.brain-map.org/t/how-to-allen-mouse-brain-atlas/2761
**Category:** Allen Mouse Brain Atlas
**Created:** [December 8, 2023, 6:37pm UTC](https://community.brain-map.org/t/how-to-allen-mouse-brain-atlas/2761 "2023-12-08T18:37:03Z")
**Posts on this page:** 1
**Page:** 1

<div class="post-metadata">

### Author: ![tylermo](https://yyz1.discourse-cdn.com/flex027/user_avatar/community.brain-map.org/tylermo/32/155_2.png) [@tylermo](https://community.brain-map.org/u/tylermo)
#### Post date: [December 8, 2023, 6:37pm UTC](https://community.brain-map.org/t/how-to-allen-mouse-brain-atlas/2761/1 "2023-12-08T18:37:03Z")

</div>

This is the online help for the ALLEN Mouse Brain Atlas web application.

The Allen Mouse Brain Atlas is a genome-wide, cellular-resolution atlas of gene expression throughout the adult mouse brain.

## KEY FEATURES:

[In situ hybridization data](https://community.brain-map.org/t/in-situ-hybridization-ish-data/2762)

- Genome-wide coverage
- Comprehensive anatomic coverage
- Microscopic resolution down to the cellular level
- Differential search for enhanced gene expression by structure
- Correlation search for genes with similar spatial expression patterns

[AGEA](https://community.brain-map.org/t/anatomic-gene-expression-atlas-agea/2763) tool for exploring transcriptome-based brain architecture and gene discovery

[Brain Explorer® 3-D viewer](https://community.brain-map.org/t/how-to-brain-explorer/2764)

[Anatomic reference atlases](https://community.brain-map.org/t/adult-mouse-brain-reference-atlas/2768)

- Coronal and sagittal plates
- High-resolution Nissl images
- Structure ontology