# How to plot an annotation slice map with solid boundaries and transparent filling for the interior? **URL:** \ **Category:** General\ **Tags:** how-to\ **Created:** [January 6, 2025, 5:56am UTC](https://community.brain-map.org/t/how-to-plot-an-annotation-slice-map-with-solid-boundaries-and-transparent-filling-for-the-interior/4042 "2025-01-06T05:56:06Z")\ **Posts on this page:** 1\ **Showing post:** 2
**Author:** ![ray.sanchez](https://yyz1.discourse-cdn.com/flex027/user_avatar/community.brain-map.org/ray.sanchez/32/679_2.png) [@ray.sanchez](https://community.brain-map.org/u/ray.sanchez)\ **Post date:** [January 8, 2025, 7:51pm UTC](https://community.brain-map.org/t/how-to-plot-an-annotation-slice-map-with-solid-boundaries-and-transparent-filling-for-the-interior/4042/2 "2025-01-08T19:51:38Z")
Hello, Thank you for your question! Unfortunately, we don’t have any tools available that do the kind of registration and visualization you’re working on here. However, this post highlights several different tools that you may find useful: > [@Mouse brain reference atlases & mapping your own data](https://community.brain-map.org/t/mouse-brain-reference-atlases-mapping-your-own-data/243): > > How do I map my data to your reference atlas? We have been hearing this question (or variants of it) for as long as the [Allen Mouse Brain Atlas](http://mouse.brain-map.org/static/atlas) has been online. The short answer is, We do not have a tool for this - but we have provided some resources to help, and many other researchers (and even companies!) have developed their own solutions. Some of those are shared here, and we welcome your additions to this list - either as publications, references to software or comments from other scie… I hope this helps! Best, Ray --- _[View the full topic](https://community.brain-map.org/t/how-to-plot-an-annotation-slice-map-with-solid-boundaries-and-transparent-filling-for-the-interior/4042)._