# Whole mouse brain gene expression data

**URL:** https://community.brain-map.org/t/whole-mouse-brain-gene-expression-data/447
**Category:** Science
**Tags:** atlas-mouse-brain-adult, transcriptomics, analysis, how-to, atlas-human-brain-adult
**Created:** [February 12, 2020, 11:12pm UTC](https://community.brain-map.org/t/whole-mouse-brain-gene-expression-data/447 "2020-02-12T23:12:14Z")
**Posts on this page:** 1
**Showing post:** 2

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### Author: ![jeremyinseattle](https://yyz1.discourse-cdn.com/flex027/user_avatar/community.brain-map.org/jeremyinseattle/32/50_2.png) [@jeremyinseattle](https://community.brain-map.org/u/jeremyinseattle)
#### Post date: [February 13, 2020, 12:51am UTC](https://community.brain-map.org/t/whole-mouse-brain-gene-expression-data/447/2 "2020-02-13T00:51:06Z")

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Hi @Oliverdillon,

The [Allen Mouse Brain Atlas](http://mouse.brain-map.org/) has exactly this at ~200um resolution, which can be [downloaded from the API](http://help.brain-map.org/display/api/Downloading+3-D+Expression+Grid+Data). See [this community forum post](https://community.brain-map.org/t/downloading-ish-or-expression-data/376/4) for some additional information on the topic. If you are looking for higher resolution, single cell RNA-seq data sets are becoming available (see end of [this post](https://community.brain-map.org/t/mouse-brain-scrnaseq-distribution-of-cells-by-cortical-layers-brain-subregions/240) for a few examples).

Best,  
Jeremy

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