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Trouble aligning flattened brains to CCFv3
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1
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34
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December 4, 2025
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Assistance needed in using Allen 3D atlas to merge with PET CT
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1
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19
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November 17, 2025
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Question on PatchSeq jupyter example
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10
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4042
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October 22, 2025
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Generating Expression Masks De Novo
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1
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64
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August 21, 2025
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Differential search (Human Brain)
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4
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627
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August 13, 2025
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Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
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8
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328
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August 13, 2025
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Estimate location of brain sagittal or coronal slice
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1
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143
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August 12, 2025
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SEA-AD Multiome problems
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3
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65
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July 24, 2025
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Getting structure masks for fine substructures
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4
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113
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July 6, 2025
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Low diversity in mapped results
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15
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109
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May 28, 2025
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Accessing putative cell type in neuropixel dataset
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9
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1298
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April 24, 2025
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Retrieving the volume of mouse brain structures with allensdk
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3
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150
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April 2, 2025
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Mouse Brain Nuclei Isolation for 10X GEM-X Flex Gene Expression
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6
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265
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February 27, 2025
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Redundant cell data in 10X Genomics Mouse Transcriptomic matrix.csv file
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0
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61
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February 12, 2025
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Are raw intracellular recording potential traces compensated for offset potential?
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1
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64
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November 20, 2024
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MERFISH spatial transcriptomics data 140 genes panel
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1
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111
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November 18, 2024
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TDP-43 Cohort and Neuropathology
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1
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58
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October 18, 2024
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Regional cell taxonomy
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3
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122
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October 15, 2024
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Gene expression matrix.cvs is too large to load it
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22
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6464
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October 8, 2024
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How do I download specific cell type gene expression data from WHB?
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2
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319
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September 9, 2024
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Potential ambiguities in eye-tracking data access
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1
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85
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August 31, 2024
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Is RPKM information included in the scRNA seq dataset?
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1
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128
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August 15, 2024
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Cell typing in limited cell types
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6
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126
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August 12, 2024
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CCR2 Expression Data in 10x scRNAseq Whole Brain (Mouse)
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1
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73
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July 24, 2024
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Preferred Images, Image Selectivity Index
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4
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162
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June 5, 2024
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Reproducing stimulation in Multimodal Characterization in Mouse Visual Cortex
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2
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140
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May 1, 2024
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How to do a correlation analysis between two specific genes across different tissues
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5
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302
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April 3, 2024
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Converting Allen mouse brain cell atlas to nifti
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3
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388
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March 19, 2024
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What does cell reporter status indicate?
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2
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250
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February 26, 2024
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Using 10X Genomics Mouse Transcriptomic matrix.csv file
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1
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323
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February 6, 2024
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