# \#atlas-mouse-spinal-cord

**URL:** https://community.brain-map.org/tag/atlas-mouse-spinal-cord/11.md

[Latest](https://community.brain-map.org/latest.md) · [Categories](https://community.brain-map.org/categories.md) · [Tags](https://community.brain-map.org/tags.md)

---

## [Mouse spinal cord reference atlas: How to get stacks and vector graphics for registration](https://community.brain-map.org/t/mouse-spinal-cord-reference-atlas-how-to-get-stacks-and-vector-graphics-for-registration/3088)

<div class="topic-metadata">

**Author:** [@sulli419](https://community.brain-map.org/u/sulli419)\
**Replies:** 11\
**Last updated:** [September 5, 2024, 8:26am UTC](https://community.brain-map.org/t/mouse-spinal-cord-reference-atlas-how-to-get-stacks-and-vector-graphics-for-registration/3088 "2024-09-05T08:26:48Z")

</div>

Hello, I want to use the Allen adult mouse spinal cord atlas to register my spinal images. I would like to get a stack of all the outlined/drawn images (atlas with all labels removed). Is this available to download an…

---

## [Spinal cord atlas group](https://community.brain-map.org/t/spinal-cord-atlas-group/3100)

<div class="topic-metadata">

**Author:** [@sulli419](https://community.brain-map.org/u/sulli419)\
**Replies:** 0\
**Last updated:** [February 23, 2024, 7:44pm UTC](https://community.brain-map.org/t/spinal-cord-atlas-group/3100 "2024-02-23T19:44:24Z")

</div>

Hi, Is there an active group addressing technical questions about the adult mouse spinal cord reference atlases? I asked a couple of questions but no reply—perhaps they were directed to the wrong place. I’m also curio…

---

## [Downloading Gene Grid Data Expression Spinal Cord](https://community.brain-map.org/t/downloading-gene-grid-data-expression-spinal-cord/1619)

<div class="topic-metadata">

**Author:** [@almonteloya](https://community.brain-map.org/u/almonteloya)\
**Replies:** 1\
**Last updated:** [May 2, 2022, 7:48pm UTC](https://community.brain-map.org/t/downloading-gene-grid-data-expression-spinal-cord/1619 "2022-05-02T19:48:41Z")

</div>

I understand is possible to download all the 3D expression data of the mouse brain using AllenSDK. Is there a similar approach to obtain all the genes annotated in the atlas mouse spinal cord?

---

## [Mouse Spinal Cord Atlas high res single image viewer broke - Flash](https://community.brain-map.org/t/mouse-spinal-cord-atlas-high-res-single-image-viewer-broke-flash/922)

<div class="topic-metadata">

**Author:** [@Ralph](https://community.brain-map.org/u/Ralph)\
**Replies:** 1\
**Last updated:** [January 31, 2021, 3:25am UTC](https://community.brain-map.org/t/mouse-spinal-cord-atlas-high-res-single-image-viewer-broke-flash/922 "2021-01-31T03:25:22Z")

</div>

The Mouse Spinal Cord Atlas most important tool for viewing high res and downloading images, the single image viewer, is down. Example: ©2021 Allen Institute for Brain Science This alert appears: Your Adobe Flash Playe…

---

## [Spinal Cord Image Registration](https://community.brain-map.org/t/spinal-cord-image-registration/387)

<div class="topic-metadata">

**Author:** [@ktyssowski](https://community.brain-map.org/u/ktyssowski)\
**Replies:** 2\
**Last updated:** [January 28, 2020, 3:36am UTC](https://community.brain-map.org/t/spinal-cord-image-registration/387 "2020-01-28T03:36:02Z")

</div>

I’m wondering if anyone knows of tools/software that make it possible to register images of mouse spinal cord sections to the Allen Brain Atlas (or another atlas). I mostly just want to be able to differentiate white mat…