Topics tagged how-to

Topic	Replies	Views	Activity
How to sync section images with MRI coordinates? Technical image-registration , analysis , how-to , mri	3	208	April 21, 2021
Expert annotation of Developing Mouse ISH data Technical api , how-to	0	176	April 20, 2021
DTT in nuclei isolation Science experiment-design , how-to , tissue-process , human	1	411	April 13, 2021
CCFv3 Highlights: Getting Started Technical atlas-mouse-brain-connectivity , reference-coordinates , anatomy , allensdk , how-to , workshop	1	516	April 7, 2021
Scrattch.hicat tutorial Cell Taxonomies atlas-cell-types , analysis , how-to	1	592	April 2, 2021
Technical information regarding images (TBI project) Technical atlas-human-brain-aging-dementia-tbi , experiment-design , how-to , tbi	2	222	March 30, 2021
Downloading gene expression of region Technical analysis , api , how-to , in-situ-hybridization	3	275	March 25, 2021
Question regarding Section position within specimen in Human Brain Technical atlas-human-brain-adult , anatomy , how-to , human	2	197	March 16, 2021
CCFv3 Highlights: Transgene Expression Data Show & Tell atlas-reference-maps , reference-coordinates , anatomy , how-to	0	268	March 9, 2021
Doubts about mouse RNA-Seq single cell data Science experiment-design , analysis , how-to , rna-seq , mouse , transcriptomics_explorer	4	368	March 8, 2021
Fastq and Bam file mapping to sample IDs in Berg Patchseq transcriptomic dataset Technical transcriptomics , analysis , how-to , rna-seq	1	209	March 5, 2021
[Brainspan ISH] Atlas Image to Section Image Technical reference-coordinates , anatomy , allensdk , api , how-to , human	1	246	February 26, 2021
Download the outlines of brain areas Technical atlas-reference-maps , anatomy , analysis , how-to , annotation	1	197	February 26, 2021
How to determine the flow Direction of Mouse Connectivity Data Technical atlas-mouse-brain-connectivity , experiment-design , analysis , how-to	2	219	February 26, 2021
Differential search (Human Brain) Technical atlas-human-brain-adult , analysis , how-to	2	187	February 25, 2021
Reproducing r-score correlations in Allen Human Brain Atlas Science atlas-human-brain-adult , training , transcriptomics , analysis , how-to	9	441	February 22, 2021
Allen Mouse CCF - accessing and using related data and tools Technical atlas-reference-maps , reference-coordinates , how-to	0	5768	November 21, 2019
Finding Region Areas of ABA Plates Technical atlas-reference-maps , anatomy , analysis , how-to	2	293	February 11, 2021
Neuropixel - empty field in units Technical brain-observatory-visual-coding , electrophysiology , allensdk , api , how-to	2	191	February 8, 2021
Alternative Synapse Models in BMTK Technical api , how-to , software	1	221	February 1, 2021
Open for (neuro)science tutorials: Tools for modeling Show & Tell training , models , how-to	0	284	January 29, 2021
Conda Install BMTK Technical models , bug-report , how-to , software	3	232	January 29, 2021
Comparing expression of two genes Science atlas-human-brain-adult , anatomy , experiment-design , analysis , how-to	8	458	January 27, 2021
Donor age information for cortical area smart seq (adult?) Science atlas-cell-types , atlas-human-brain-adult , celltype , experiment-design , how-to	3	234	January 20, 2021
Nuclei isolation for single-nuclei rna sequencing Technical how-to , rna-seq , tissue-process	2	607	January 27, 2021
Access 3d data for blender based animations Technical atlas-reference-maps , anatomy , analysis , api , how-to	0	217	January 18, 2021
Choosing a specific atlas ontology and download data Technical atlas-mouse-brain-adult , how-to	8	257	January 21, 2021
What is the meaning of atlas_id and st_level in 1.json? Technical atlas-mouse-brain-adult , anatomy , experiment-design , how-to	3	327	January 19, 2021
M1 10X Reference FastQ files Science experiment-design , how-to , rna-seq , atac-seq	1	197	January 8, 2021
Common Cell Type Nomenclature (CCN) publication now available in eLife Cell Taxonomies celltype , analysis , how-to , publication	0	246	January 8, 2021