# \#image-registration **URL:** https://community.brain-map.org/tag/image-registration/28.md [Latest](https://community.brain-map.org/latest.md) · [Categories](https://community.brain-map.org/categories.md) · [Tags](https://community.brain-map.org/tags.md) --- ## [2nd Get Your Brain Together Hackathon](https://community.brain-map.org/t/2nd-get-your-brain-together-hackathon/2330)
**Author:** [@thewtex](https://community.brain-map.org/u/thewtex)\ **Replies:** 0\ **Last updated:** [May 4, 2023, 1:14am UTC](https://community.brain-map.org/t/2nd-get-your-brain-together-hackathon/2330 "2023-05-04T01:14:40Z")
2nd Get Your Brain Together Hackathon What? The Get Your Brain Together hackathons bring together neuroimage data generators, image registration researchers, and neurodata compute infrastructure providers for a hands-o… --- ## [Pixel size of mouse brain images in Allen Brain Atlas](https://community.brain-map.org/t/pixel-size-of-mouse-brain-images-in-allen-brain-atlas/1187)
**Author:** [@jishar](https://community.brain-map.org/u/jishar)\ **Replies:** 4\ **Last updated:** [July 19, 2021, 7:25pm UTC](https://community.brain-map.org/t/pixel-size-of-mouse-brain-images-in-allen-brain-atlas/1187 "2021-07-19T19:25:28Z")
Hello! I am working on a project related to spatio-molecular methods and for that, I’d need to know the pixel size (i.e. which real world length one pixel represents) of the images present in the URL below: https://mou… --- ## [How to sync section images with MRI coordinates?](https://community.brain-map.org/t/how-to-sync-section-images-with-mri-coordinates/1043)
**Author:** [@justgos](https://community.brain-map.org/u/justgos)\ **Replies:** 3\ **Last updated:** [April 21, 2021, 8:09am UTC](https://community.brain-map.org/t/how-to-sync-section-images-with-mri-coordinates/1043 "2021-04-21T08:09:30Z")
Hi! i want to align 2D slice image to the MRI space and having difficulty getting information about Z axis (and also some dangling parameters in X and Y): Given the slide image 102058920, which belongs to the root spec… --- ## [Confused about datasets (mouse gene expression - ISH)](https://community.brain-map.org/t/confused-about-datasets-mouse-gene-expression-ish/897)
**Author:** [@Momo](https://community.brain-map.org/u/Momo)\ **Replies:** 3\ **Last updated:** [January 26, 2021, 11:07pm UTC](https://community.brain-map.org/t/confused-about-datasets-mouse-gene-expression-ish/897 "2021-01-26T23:07:31Z")
Hi, I have been going through the literature on mouse gene expression datasets, and I read this article: https://www.nature.com/articles/nn.2281 This mentions that the AGEA was made from 4,000+ genes from the ABA, eac… --- ## [Spinal Cord Image Registration](https://community.brain-map.org/t/spinal-cord-image-registration/387)
**Author:** [@ktyssowski](https://community.brain-map.org/u/ktyssowski)\ **Replies:** 2\ **Last updated:** [January 28, 2020, 3:36am UTC](https://community.brain-map.org/t/spinal-cord-image-registration/387 "2020-01-28T03:36:02Z")
I’m wondering if anyone knows of tools/software that make it possible to register images of mouse spinal cord sections to the Allen Brain Atlas (or another atlas). I mostly just want to be able to differentiate white mat… --- ## [Downloading ISH or Expression data](https://community.brain-map.org/t/downloading-ish-or-expression-data/376)
**Author:** [@akozlov](https://community.brain-map.org/u/akozlov)\ **Replies:** 6\ **Last updated:** [December 17, 2019, 8:11pm UTC](https://community.brain-map.org/t/downloading-ish-or-expression-data/376 "2019-12-17T20:11:58Z")
I want to estimate neuron number, neuron density or local neuron density gradient in a specific brain region using a marker gene expression. For example, for Pvalb in Gene Search I get ISH or Expression images like this: … --- ## [Horizontal plates p56 mouse brain](https://community.brain-map.org/t/horizontal-plates-p56-mouse-brain/222)
**Author:** [@tweagles1](https://community.brain-map.org/u/tweagles1)\ **Replies:** 4\ **Last updated:** [July 17, 2019, 6:53pm UTC](https://community.brain-map.org/t/horizontal-plates-p56-mouse-brain/222 "2019-07-17T18:53:23Z")
Hello everyone! I was wondering if there is a way to have access to and download horizontal plates of p56 mouse brain. They are not there in the reference atlas (as far as I know), but in the connectivity atlas - spati… --- ## [AllenSDK 0.16.2 released](https://community.brain-map.org/t/allensdk-0-16-2-released/168)
**Author:** [@nicholasc](https://community.brain-map.org/u/nicholasc)\ **Replies:** 0\ **Last updated:** [April 26, 2019, 6:53pm UTC](https://community.brain-map.org/t/allensdk-0-16-2-released/168 "2019-04-26T18:53:01Z")
A new version of the AllenSDK has been released! Transforms for tissuecyte registration are now accessible from allensdk.