# \#mri

**URL:** https://community.brain-map.org/tag/mri/64.md

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## [How to sync section images with MRI coordinates?](https://community.brain-map.org/t/how-to-sync-section-images-with-mri-coordinates/1043)

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**Author:** [@justgos](https://community.brain-map.org/u/justgos)\
**Replies:** 3\
**Last updated:** [April 21, 2021, 8:09am UTC](https://community.brain-map.org/t/how-to-sync-section-images-with-mri-coordinates/1043 "2021-04-21T08:09:30Z")

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Hi! i want to align 2D slice image to the MRI space and having difficulty getting information about Z axis (and also some dangling parameters in X and Y): Given the slide image 102058920, which belongs to the root spec…

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## [Displaying data in common coordinate framework - CCF reference space](https://community.brain-map.org/t/displaying-data-in-common-coordinate-framework-ccf-reference-space/781)

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**Author:** [@Momo](https://community.brain-map.org/u/Momo)\
**Replies:** 6\
**Last updated:** [December 2, 2020, 8:47pm UTC](https://community.brain-map.org/t/displaying-data-in-common-coordinate-framework-ccf-reference-space/781 "2020-12-02T20:47:19Z")

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Hi, I would like to ask how I can display some MRI and morphological data that I have brought to Common Coordinate Framework with Allen Brain tools. (Like making some heat maps in different mouse brain regions). Your h…

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## [How to plot mean rather than individual human expression data](https://community.brain-map.org/t/how-to-plot-mean-rather-than-individual-human-expression-data/521)

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**Author:** [@Marcondes](https://community.brain-map.org/u/Marcondes)\
**Replies:** 2\
**Last updated:** [April 23, 2020, 1:48pm UTC](https://community.brain-map.org/t/how-to-plot-mean-rather-than-individual-human-expression-data/521 "2020-04-23T13:48:11Z")

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Hi, I am a new user of the Allen Human Brain Atlas database. Currently, I am using structural neuroimaging to characterize brain damage in a group of rare monogenic disorders. It would be nice to compare our brain volu…