Topics tagged reference-coordinates

Topic	Replies	Views	Activity
[Brainspan ISH] Atlas Image to Section Image Technical reference-coordinates , anatomy , allensdk , api , how-to , human	1	748	February 26, 2021
Data Analysis for cell detection at adult mouse Technical atlas-mouse-brain-adult , reference-coordinates , analysis	2	455	December 21, 2020
How can I access the brain surface that is used in adult human brain atlas? Science atlas-reference-maps , atlas-human-brain-adult , reference-coordinates , anatomy , how-to	1	797	December 21, 2020
Displaying data in common coordinate framework - CCF reference space Show & Tell reference-coordinates , analysis , how-to , mri	6	862	December 2, 2020
Missing region IDs Technical reference-coordinates , analysis , how-to , software	7	1371	September 1, 2020
Voxel Extraction in Mouse Brain Technical atlas-reference-maps , reference-coordinates , anatomy , analysis , how-to	1	918	August 27, 2020
CCF rego 2020 competition Show & Tell reference-coordinates , analysis	1	1629	August 26, 2020
Image-to-reference for whole section or section dataset? Technical reference-coordinates , api , how-to	1	630	August 3, 2020
Creating meshes from volumetric data Technical atlas-reference-maps , reference-coordinates , anatomy , allensdk , how-to , annotation	5	2095	June 28, 2020
Creating 3d reference atlas for a P7 mice Technical atlas-reference-maps , reference-coordinates , how-to , software	2	988	March 20, 2020
Relationship between injection coordinates in data portal and sdk Technical atlas-mouse-brain-connectivity , reference-coordinates , allensdk , how-to	2	1247	February 7, 2020
FAQ: How can I get a printed or PDF version of the [mouse, human brain] reference atlas? General atlas-reference-maps , atlas-mouse-brain-adult , atlas-human-brain-adult , reference-coordinates , anatomy , how-to , annotation	0	17525	January 23, 2020
Human brain MTG single cell data mapped to mouse brain single cell RNAseq? Science reference-coordinates , transcriptomics , rna-seq , mouse , human	9	1911	January 24, 2020
CHAMBER expansion – which proteins would you be interested to see the distributions of? Show & Tell atlas-reference-maps , reference-coordinates , histology	0	806	January 8, 2020
Quantifying Grey Matter to White Matter ratios from images of brain slices Science reference-coordinates , anatomy , human	2	736	January 7, 2020
BrainModules an interactive viewing tool Show & Tell atlas-mouse-brain-connectivity , reference-coordinates , connectivity	0	797	November 23, 2019
Histology slice alignment tool [Python] Technical atlas-reference-maps , reference-coordinates , python , how-to , histology	1	1895	November 21, 2019
Mouse neurons reconstruction -> CCF alignment Show & Tell atlas-mouse-brain-connectivity , reference-coordinates , python , analysis , allensdk , software	2	1466	October 31, 2019
Coordinates to brain structure api Technical reference-coordinates , anatomy , api	2	963	October 28, 2019
Is Allen Brain Observatory in vivo calcium image data integrated with other 3D brain mapped datasets? Technical brain-observatory-visual-coding , reference-coordinates	0	738	July 3, 2019
Matlab tool to visualize input output strength of specific brain area Show & Tell rave , reference-coordinates , connectivity , analysis , software	1	1027	September 5, 2019
View my own volumetric data in BrainExplorer Technical atlas-reference-maps , reference-coordinates , brain-explorer , api , how-to	1	1263	August 22, 2019
Aligning dorsal projection of mouse common coordinate framework with wide-field images of mouse brain Technical reference-coordinates , python , allensdk	3	2861	August 15, 2019
Atlas anatomy terminology and other anatomical notations Science atlas-human-brain-adult , reference-coordinates , anatomy , human	6	1991	July 29, 2019
AllenSDK 0.16.2 released Technical reference-coordinates , image-registration , allensdk , tissuecyte , software	0	752	April 26, 2019
Why doesn't the 3D Mouse Brain Atlas have Bregma coordinates? Science atlas-reference-maps , atlas-mouse-brain-adult , atlas-mouse-brain-connectivity , reference-coordinates , anatomy , analysis	0	7728	April 19, 2019