# \#single-cell-morphology **URL:** https://community.brain-map.org/tag/single-cell-morphology/96.md [Latest](https://community.brain-map.org/latest.md) · [Categories](https://community.brain-map.org/categories.md) · [Tags](https://community.brain-map.org/tags.md) --- ## [A question about the morphological data processing in "Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells."](https://community.brain-map.org/t/a-question-about-the-morphological-data-processing-in-integrated-morphoelectric-and-transcriptomic-classification-of-cortical-gabaergic-cells/3809)
**Author:** [@beilouer](https://community.brain-map.org/u/beilouer)\ **Replies:** 0\ **Last updated:** [October 25, 2024, 2:05am UTC](https://community.brain-map.org/t/a-question-about-the-morphological-data-processing-in-integrated-morphoelectric-and-transcriptomic-classification-of-cortical-gabaergic-cells/3809 "2024-10-25T02:05:13Z")
I have read the article “Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells,” and I greatly admire this work. I am currently conducting some related research, and I would like to ask … --- ## [Patch-seq Method](https://community.brain-map.org/t/patch-seq-method/2700)
**Author:** [@racheld](https://community.brain-map.org/u/racheld)\ **Replies:** 0\ **Last updated:** [November 9, 2023, 12:25am UTC](https://community.brain-map.org/t/patch-seq-method/2700 "2023-11-09T00:25:38Z")
Patch-seq Method The method in which the morphology, electrophysiology and transcriptome (gene expression) profiles are assayed simultaneously from the same neuron. Here we detail the various steps and tools to generate… --- ## [Is the absolute soma depth (in um) available for the neurons in the Cell Types database?](https://community.brain-map.org/t/is-the-absolute-soma-depth-in-um-available-for-the-neurons-in-the-cell-types-database/1748)
**Author:** [@Thijs](https://community.brain-map.org/u/Thijs)\ **Replies:** 8\ **Last updated:** [July 14, 2023, 8:24am UTC](https://community.brain-map.org/t/is-the-absolute-soma-depth-in-um-available-for-the-neurons-in-the-cell-types-database/1748 "2023-07-14T08:24:31Z")
Hi, I would like to have the absolute distance of the soma from pia for some of the neurons in the cell types database. Is this available? I’ve so far only found nomalised soma depth. From the Kalmbach et al Neuron 2018 … --- ## [Layer information in Cell Types database](https://community.brain-map.org/t/layer-information-in-cell-types-database/2147)
**Author:** [@rubtev](https://community.brain-map.org/u/rubtev)\ **Replies:** 2\ **Last updated:** [February 28, 2023, 5:16pm UTC](https://community.brain-map.org/t/layer-information-in-cell-types-database/2147 "2023-02-28T17:16:12Z")
Hi, I’ve been using the Cell Feature Search tool in the Cell Types database to find mouse cortical interneurons. In the search tool, all the neurons found are showcased in this way, with plots showing both their morphol… --- ## [Violation of SWC spec in at least three files](https://community.brain-map.org/t/violation-of-swc-spec-in-at-least-three-files/2110)
**Author:** [@patrick-nicodemus](https://community.brain-map.org/u/patrick-nicodemus)\ **Replies:** 2\ **Last updated:** [February 2, 2023, 3:16am UTC](https://community.brain-map.org/t/violation-of-swc-spec-in-at-least-three-files/2110 "2023-02-02T03:16:21Z")
The SWC spec here requires that “Parent samples must be defined before they are being referred to.” https://neuroinformatics.nl/swcPlus/ The SWC spec described here requires that “Parent samples should appear before an… --- ## [Paired Human Morphology & Transcriptomics Data?](https://community.brain-map.org/t/paired-human-morphology-transcriptomics-data/1211)
**Author:** [@bmarsh](https://community.brain-map.org/u/bmarsh)\ **Replies:** 3\ **Last updated:** [January 25, 2023, 8:17pm UTC](https://community.brain-map.org/t/paired-human-morphology-transcriptomics-data/1211 "2023-01-25T20:17:16Z")
I am having trouble finding human cells for which both full morphological reconstructions and transcriptomics data exist. I see that the human transcriptomics data for the Multimodal Characterization of Individual Neuro… --- ## [36 reconstructed mouse GABA neurons cannot be accessed](https://community.brain-map.org/t/36-reconstructed-mouse-gaba-neurons-cannot-be-accessed/2003)
**Author:** [@fun0515](https://community.brain-map.org/u/fun0515)\ **Replies:** 6\ **Last updated:** [January 6, 2023, 11:50am UTC](https://community.brain-map.org/t/36-reconstructed-mouse-gaba-neurons-cannot-be-accessed/2003 "2023-01-06T11:50:28Z")
I’m now trying to download the available 528 reconstructed neuron data opened by an article in the BICCN project, titled “Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells”(Multimoda… --- ## [Question about Quantifying Neuron Complexity with Sholl Analysis](https://community.brain-map.org/t/question-about-quantifying-neuron-complexity-with-sholl-analysis/1900)
**Author:** [@hsonoda24](https://community.brain-map.org/u/hsonoda24)\ **Replies:** 1\ **Last updated:** [October 21, 2022, 8:45pm UTC](https://community.brain-map.org/t/question-about-quantifying-neuron-complexity-with-sholl-analysis/1900 "2022-10-21T20:45:05Z")
Hello, my peers and I were wondering if dendrite and axon complexity can be accurately measured with Sholl analysis. Is it also possible to quantify neuron complexity with a single value through Sholl analysis? Thank you… --- ## [Obtaining dendritic length from precomputed morphology features](https://community.brain-map.org/t/obtaining-dendritic-length-from-precomputed-morphology-features/1825)
**Author:** [@ajuavinett](https://community.brain-map.org/u/ajuavinett)\ **Replies:** 2\ **Last updated:** [September 15, 2022, 9:13pm UTC](https://community.brain-map.org/t/obtaining-dendritic-length-from-precomputed-morphology-features/1825 "2022-09-15T21:13:24Z")
Hello – we are interested in calculating total dendritic length from the precomputed features and have a few questions: What is total\_length is in the dataset? Does total\_length include the cell body and axon, or is i… --- ## [Missing mouse Patch-Seq morphologies on download.brainimagelibrary.org](https://community.brain-map.org/t/missing-mouse-patch-seq-morphologies-on-download-brainimagelibrary-org/1705)
**Author:** [@yroussel](https://community.brain-map.org/u/yroussel)\ **Replies:** 2\ **Last updated:** [July 12, 2022, 6:27pm UTC](https://community.brain-map.org/t/missing-mouse-patch-seq-morphologies-on-download-brainimagelibrary-org/1705 "2022-07-12T18:27:33Z")
Hello, I am trying to download mouse Patch-Seq morphologies from https://download.brainimagelibrary.org/biccn/zeng/pseq/morph/200526/ but it seems that most of the files are almost empty (~50 ko). There are only 36 file… --- ## [Cell Volume from Reconstruction SWC File](https://community.brain-map.org/t/cell-volume-from-reconstruction-swc-file/1097)
**Author:** [@Veritatem\_Amo](https://community.brain-map.org/u/Veritatem_Amo)\ **Replies:** 2\ **Last updated:** [May 26, 2021, 2:41am UTC](https://community.brain-map.org/t/cell-volume-from-reconstruction-swc-file/1097 "2021-05-26T02:41:45Z")
I am trying to get each neurons’ cell volume from the cell type morphology dataset. For individual cells, I can get the reconstruction SWC files. In python, if I use the total\_volume function from neuron\_morphology.featu…