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This is a Civilized Place for Public Discussion Please treat this discussion forum with the same respect you would a public park. We, too, are a shared community resource — a place to share skills, knowledge and inter…

2 March 15, 2019
Welcome to the Allen Brain Map Community Forum! 4 June 14, 2018
Access connectivity streamline data 16 September 14, 2019
Does the neuronal noise in cortex help generalization? 1 September 13, 2019
Comparing cross-organ gene expression levels: How much, and where are genes expressed? 3 September 11, 2019
Missing region IDs 2 September 10, 2019
Got questions about software? Visit AllenSDK on GitHub 1 September 10, 2019
Access to unfiltered BAM and IDH mutation status for IvyGap 2 September 6, 2019
How can I get the L0 regularization events for a specific cell ID? 3 September 6, 2019
Matlab tool to visualize input output strength of specific brain area 2 September 5, 2019
3d connectivity strength visualization 3 September 4, 2019
IBRO 2019 - Daegu, South Korea 1 August 23, 2019
Our code for predicting cell type of neurons from Allen Cell DB 1 August 23, 2019
Where can I download single nucleus RNA-seq data from human cortex? 3 August 22, 2019
View my own volumetric data in BrainExplorer 2 August 22, 2019
Why are there so many oligodendrocytes in snRNAseq studies from post mortem human brains? 2 August 22, 2019
Cell Type Atlas available? 3 August 21, 2019
Open questions from recent workshops on cell ontology and taxonomy 6 August 20, 2019
Mouse brain reference atlases & mapping your own data 1 August 16, 2019
Aligning dorsal projection of mouse common coordinate framework with wide-field images of mouse brain 4 August 15, 2019
Is dipde unmaintained? 3 August 14, 2019
Atlas anatomy terminology and other anatomical notations 7 July 29, 2019
How do I access raw RNA-Seq data (e.g., FASTQ, bam)? 3 July 23, 2019
Mouse brain scRNAseq: distribution of cells by cortical layers/brain subregions 4 August 12, 2019
Human brain MTG single cell data mapped to mouse brain single cell RNAseq? 5 August 12, 2019
Reproducing Allen CCFv3 (eg downloading mouse brain volumes) 5 August 8, 2019
Horizontal plates p56 mouse brain 5 July 17, 2019
Brain Explorer 2 crashing when visualizing human gene data 4 July 8, 2019
Allen Brain Explorer functionality: Loading 3D Brain Reference Map Models into MatLab/Python/R 2 July 8, 2019
Is Allen Brain Observatory in vivo calcium image data integrated with other 3D brain mapped datasets? 1 July 3, 2019