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Community Guidelines

This is a Civilized Place for Public Discussion Please treat this discussion forum with the same respect you would a public park. We, too, are a shared community resource — a place to share skills, knowledge and inter…

2 March 15, 2019
Welcome to the Allen Brain Map Community Forum! 4 June 14, 2018
Open questions from recent workshops on cell ontology and taxonomy 5 August 19, 2019
Mouse brain reference atlases & mapping your own data 1 August 16, 2019
Aligning dorsal projection of mouse common coordinate framework with wide-field images of mouse brain 4 August 15, 2019
Is dipde unmaintained? 3 August 14, 2019
Atlas anatomy terminology and other anatomical notations 7 July 29, 2019
How do I access raw RNA-seq data (e.g., FASTQ, bam)? 3 July 23, 2019
Mouse brain scRNAseq: distribution of cells by cortical layers/brain subregions 4 August 12, 2019
Human brain MTG single cell data mapped to mouse brain single cell RNAseq? 5 August 12, 2019
Reproducing Allen CCFv3 (eg downloading mouse brain volumes) 5 August 8, 2019
Horizontal plates p56 mouse brain 5 July 17, 2019
Brain Explorer 2 crashing when visualizing human gene data 4 July 8, 2019
Allen Brain Explorer functionality: Loading 3D Brain Reference Map Models into MatLab/Python/R 2 July 8, 2019
Is Allen Brain Observatory in vivo calcium image data integrated with other 3D brain mapped datasets? 1 July 3, 2019
How to find the Image SubID on the Ivy Glioblastoma dataset for image download 7 July 2, 2019
Neurofutures 2019 - Portland, OR 2 July 2, 2019
How to download images from the Ivy Glioblastoma Atlas Project 2 July 2, 2019
How do I download reference atlas images? 6 April 25, 2019
Downloading human age-related gene expression levels and making figures 3 June 26, 2019
Preprints out for transcriptional and epigenomic profiling of mouse and human neurons 2 June 18, 2019
Wrong annotations 2 June 17, 2019
Mice, and more mice! 1 June 13, 2019
BioImage Informatics 2019 1 May 31, 2019
Availability of human genome sequence data 2 May 24, 2019
AllenSDK 0.16.3 released 1 May 24, 2019
Help saving data on brain explorer 2 May 23, 2019
Quantification of gene expression by in situ hybridization: finding and using the raw values 4 May 21, 2019
Paper for RNA-Seq data 4 May 17, 2019
Attempting to Download Substructures for Coronal P56 Mouse Atlas 3 May 14, 2019