How To

Brain Knowledge Platform The Brain Knowledge Platform is a data platform and website for researchers to access data, explore features and visualizations, and connect data to knowledge. This product is an active area of development for the Allen Institute for Brain Science, and new features are released regularly. Transcriptomics Explorer A place for questions and discussions about the Transcriptomics Explorer, a web tool for researchers to explorer transcriptomics dataset in the context of cell types.

Topic	Replies	Views	Activity
About the How To category How To	0	13	May 24, 2021
How to: Browse Specimen Information Brain Knowledge Platform	0	44	May 24, 2021
How to: Choose Specimen Properties Brain Knowledge Platform	0	44	May 24, 2021
How to: Browse Specimen Visualizations Brain Knowledge Platform	0	38	May 24, 2021
How to: Filter Specimens Brain Knowledge Platform	0	41	May 24, 2021
How to: Sort Specimens Brain Knowledge Platform	0	46	May 24, 2021
How to: Share a Set of Specimens Brain Knowledge Platform	0	36	May 24, 2021
How to: Download Specimen Information Brain Knowledge Platform	0	47	May 24, 2021
How to: Explore Specimen Data Brain Knowledge Platform Projects leads in the Data Catalog can publicly release information about specimens (cells, slices, brains) through the Brain Knowledge Platform. Public researchers can explore these projects through the knowledge.brain-…	1	61	May 24, 2021
Is there a way to associate median-cluster cell type aliases with their structure ids? Transcriptomics Explorer atlas-cell-types , anatomy , how-to	2	77	May 4, 2021
List of Cell-Type and/or Cluster Markers Transcriptomics Explorer transcriptomics , celltype , analysis , how-to	1	60	May 3, 2021
New Genome Browser views for single cell/nucleus transcriptomics! Transcriptomics Explorer celltype , rna-seq	0	72	January 13, 2021
PKM Splice Variants Transcriptomics Explorer transcriptomics , rna-seq	1	110	November 26, 2020
Human dopaminergic neurons Transcriptomics Explorer atlas-cell-types , atlas-human-brain-adult , transcriptomics , celltype , analysis	2	146	November 12, 2020
How to set median data in transcriptomics explorer in human datasets? Transcriptomics Explorer atlas-human-brain-adult , transcriptomics , how-to , human	8	315	November 3, 2020
Reconstructing the dendrogram shown in the transcriptomics explorer with R based on the .json file Transcriptomics Explorer transcriptomics , analysis , how-to , software	1	124	October 27, 2020
Transcriptomic explorere missing information? Transcriptomics Explorer atlas-cell-types , transcriptomics , analysis , how-to	1	136	October 21, 2020
Metadata of mouse whole cortex and hippocampus 10x data set Transcriptomics Explorer	1	111	October 15, 2020
How to convert scRNA gene names to common gene IDs? Transcriptomics Explorer analysis	2	117	October 8, 2020
Getting Started: Scatterplot (tSNE or UMAP) Transcriptomics Explorer	0	150	August 12, 2020
Getting Started: Gene Expression Heatmap Transcriptomics Explorer	0	203	August 12, 2020
Getting Started: Dataset Sampling Strategy Transcriptomics Explorer	0	111	August 12, 2020
From electrophysiology to t-types Transcriptomics Explorer celltype , analysis	2	151	August 7, 2020
Does Allen brain provide user open source to build transcriptomics explorer? Transcriptomics Explorer	1	118	July 24, 2020
How to set median data in transcriptomics explorer in mouse datasets? Transcriptomics Explorer atlas-mouse-brain-adult , transcriptomics , how-to	4	169	July 12, 2020
Can we download a Heat Map or t-SNE visualisation? Transcriptomics Explorer atlas-cell-types , analysis , how-to , software	1	207	May 8, 2020
What brain regions are denoted as M1ul/M1lm and S1ul/S1lm? Transcriptomics Explorer atlas-cell-types , anatomy , analysis	1	357	April 27, 2020
Citation for Allen scRNAseq Mouse and Human datasets Transcriptomics Explorer transcriptomics , rna-seq , publication	4	333	March 30, 2020
Non-anonymized BAM files Transcriptomics Explorer transcriptomics , analysis , how-to , rna-seq , human , alzheimers	1	240	March 26, 2020
Supported browsers Transcriptomics Explorer	0	181	February 7, 2020