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Allen Human Reference Atlas - 3D, 2020 (new!)
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19
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12772
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January 23, 2025
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Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
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6
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95
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December 10, 2024
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Allen Mouse CCF - accessing and using related data and tools
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2
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34314
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July 22, 2024
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How to map parcellation indices to anatomical ontology IDs in CCFv3 between the Allen Cell Atlas and Gene Expression Atlases?
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0
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85
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July 15, 2024
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Brain region and donor metadata for human snRNAseq 10x based cross area datasets
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0
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156
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April 4, 2024
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Accessing directory of SectionImage
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0
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97
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April 4, 2024
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Human Reference Atlas Right Hemisphere
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2
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622
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March 8, 2024
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Question about data in AGEA
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4
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278
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March 4, 2024
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Mouse reference atlas areas volume
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0
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234
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February 9, 2024
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Code to visualize neuropixel probe trajectories from the visual behaviour dataset?
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6
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351
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January 26, 2024
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Bregma-Lambda Distance in High Resolution Allen Brain Atlas: Mouse Brain
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0
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796
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January 26, 2024
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Afferent/efferent projections Brain explorer2 issue
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0
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200
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November 21, 2023
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Differences in Hex Values for Brain Regions Across Different Sources
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0
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299
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June 14, 2023
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Mouse brain reference atlases & mapping your own data
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6
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12250
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May 30, 2023
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Uploading pretrained scvi model on the SEA-AD Reference to the Hugging Face scvi-hub
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2
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401
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May 18, 2023
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Structure ids from annotation atlas do not match the structure ids in the json graph (mouse brain)
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2
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924
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September 29, 2022
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CCFv3 annotation: wrong IDs
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4
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1318
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September 22, 2022
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Attempting to Download Substructures for Coronal P56 Mouse Atlas
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5
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2309
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August 20, 2022
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Allen Mouse CCF - gallery of tools and publications
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15
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5560
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August 15, 2021
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Sagittal section for P4 and P14 mouse brain
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1
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435
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July 10, 2021
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Doubts in the Annotation Workflow in Allen Brain CCFv3
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1
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628
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July 5, 2021
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Does CCFv3 include 3D atlas of AchE, NeuN, DAPI, SMI-99, and NF-160?
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1
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577
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June 24, 2021
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Assigning Allen Transcriptomic Taxonomy to External Dataset
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3
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608
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June 17, 2021
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Find ISH data related to specific atlas plate
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3
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592
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May 28, 2021
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CCFv3 Highlights: "Tilting at the cortex"
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3
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3469
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March 21, 2021
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Brain Explorer 2 crashes frequently on Mac/Catalina
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5
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1787
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March 14, 2021
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CCFv3 Highlights: Transgene Expression Data
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0
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847
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March 9, 2021
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Download the outlines of brain areas
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1
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1374
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February 26, 2021
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Finding Region Areas of ABA Plates
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2
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810
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February 11, 2021
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Access 3d data for blender based animations
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0
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588
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January 18, 2021
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