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Mouse brain reference atlases & mapping your own data
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7
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12445
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March 26, 2025
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Is there a cell type taxonomy of mouse in the hippocampus?
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4
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30
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March 20, 2025
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Downloading full resolution images using AllenSDK
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5
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141
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February 24, 2025
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Neocortex and SATB2 expression
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1
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31
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February 14, 2025
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Artificial Brain generation copycat from a normnal brain possible?
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2
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44
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February 7, 2025
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Identifying the cell type based on cluster_name
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1
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72
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January 13, 2025
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How to plot an annotation slice map with solid boundaries and transparent filling for the interior?
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2
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53
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January 10, 2025
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How to download images from the Ivy Glioblastoma Atlas Project
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3
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2458
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January 7, 2025
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New abc_atlas_acces release with Aging Mouse Data
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0
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65
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December 18, 2024
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Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
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6
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125
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December 10, 2024
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Processed gene expression matrix for SEA-AD?
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1
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40
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December 10, 2024
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How to use microarray data
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3
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51
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December 10, 2024
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How can I optimize my snRNA-seq workflow—both experimentally and bioinformatically—to enable high-resolution transcriptomic cell type mapping?
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2
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93
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December 4, 2024
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Whole Human Brain (WHB) 10x RNA-seq Data Celltype Annotations
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1
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35
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November 25, 2024
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Download image stacks
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1
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55
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November 22, 2024
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MapMyCells Troubleshooting Guide
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1
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583
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November 18, 2024
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Using the brain map for teaching
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1
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61
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November 7, 2024
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How to use "Mouse Whole Cortex and Hippocampus 10x" to annotate a spatial data set in seuart?
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2
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1044
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June 1, 2023
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Gene expression matrix.cvs is too large to load it
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22
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6082
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October 8, 2024
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How to: Use BKP file manifest to access BICAN data at NeMO archive
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0
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175
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July 18, 2024
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Map cells to their cell type
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4
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506
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September 27, 2024
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How do I download specific cell type gene expression data from WHB?
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2
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176
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September 9, 2024
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Comparing expression of a subset of genes in a subset or areas across cell types
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5
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117
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September 9, 2024
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Access to donor id from cell_id
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2
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48
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September 6, 2024
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Developing Mouse volumetric data and segmentation
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0
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50
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July 30, 2024
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Functions or models that can fit spike firing rates or local field potential (LFP)
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0
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23
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July 24, 2024
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Clarification Needed on Reference Setup in HiCAT Tutorial
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0
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20
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July 24, 2024
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Allen Mouse CCF - accessing and using related data and tools
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2
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38152
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July 22, 2024
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How to download the original 1675 STPT images data of mouse brain that used for the Allen mouse atlas?
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0
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50
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July 9, 2024
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How MERFISH obtained x,y,z coordinates of each cell
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0
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67
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July 9, 2024
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