reference-coordinates

Topic Replies Views Activity
Creating meshes from volumetric data
Technical
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  allensdk ,  how-to ,  annotation
3 122 May 28, 2020
Human Brain Atlas Mesh Files
Technical
atlas-reference-maps ,  atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  how-to ,  software ,  human
2 56 May 28, 2020
Allen Human Reference Atlas - 3D, 2020 (new!)
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  human
5 504 May 27, 2020
Allen Mouse CCF - accessing and using related data and tools
Technical
atlas-reference-maps ,  reference-coordinates ,  how-to
1 647 November 21, 2019
Creating 3d reference atlas for a P7 mice
Technical
atlas-reference-maps ,  reference-coordinates ,  how-to ,  software
3 100 March 20, 2020
Mouse brain reference atlases & mapping your own data
Technical
atlas-reference-maps ,  reference-coordinates ,  how-to
6 1260 February 19, 2020
Relationship between injection coordinates in data portal and sdk
Technical
atlas-mouse-brain-connectivity ,  reference-coordinates ,  allensdk ,  how-to
3 112 February 7, 2020
FAQ: How can I get a printed or PDF version of the [mouse, human brain] reference atlas?
atlas-reference-maps ,  atlas-mouse-brain-adult ,  atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  how-to ,  annotation
1 162 January 23, 2020
Human brain MTG single cell data mapped to mouse brain single cell RNAseq?
Science
reference-coordinates ,  transcriptomics ,  rna-seq ,  mouse ,  human
10 284 January 24, 2020
CHAMBER expansion – which proteins would you be interested to see the distributions of?
Show & Tell
atlas-reference-maps ,  reference-coordinates ,  histology
1 104 January 8, 2020
Quantifying Grey Matter to White Matter ratios from images of brain slices
Science
reference-coordinates ,  anatomy ,  human
3 179 January 7, 2020
BrainModules an interactive viewing tool
Show & Tell
atlas-mouse-brain-connectivity ,  reference-coordinates ,  connectivity
1 166 November 23, 2019
Histology slice alignment tool [Python]
Technical
atlas-reference-maps ,  reference-coordinates ,  python ,  how-to ,  histology
2 245 November 21, 2019
Mouse neurons reconstruction -> CCF alignment
Show & Tell
atlas-mouse-brain-connectivity ,  reference-coordinates ,  python ,  analysis ,  allensdk ,  software
3 229 October 31, 2019
Coordinates to brain structure api
Technical
reference-coordinates ,  anatomy ,  api
3 177 October 28, 2019
CCF rego 2020 competition
Show & Tell
reference-coordinates ,  analysis
1 598 October 18, 2019
Missing region IDs
Technical
reference-coordinates ,  analysis ,  how-to ,  software
4 230 September 18, 2019
Is Allen Brain Observatory in vivo calcium image data integrated with other 3D brain mapped datasets?
Technical
brain-observatory-visual-coding ,  reference-coordinates
1 295 July 3, 2019
Matlab tool to visualize input output strength of specific brain area
Show & Tell
rave ,  reference-coordinates ,  connectivity ,  analysis ,  software
2 186 September 5, 2019
View my own volumetric data in BrainExplorer
Technical
atlas-reference-maps ,  reference-coordinates ,  brain-explorer ,  api ,  how-to
2 240 August 22, 2019
Aligning dorsal projection of mouse common coordinate framework with wide-field images of mouse brain
Technical
reference-coordinates ,  python ,  allensdk
4 575 August 15, 2019
Atlas anatomy terminology and other anatomical notations
Science
atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  human
7 361 July 29, 2019
Attempting to Download Substructures for Coronal P56 Mouse Atlas
Technical
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  api ,  how-to
3 444 May 14, 2019
AllenSDK 0.16.2 released
Technical
reference-coordinates ,  image-registration ,  allensdk ,  tissuecyte ,  software
1 284 April 26, 2019
Why doesn't the 3D Mouse Brain Atlas have Bregma coordinates?
Science
atlas-reference-maps ,  atlas-mouse-brain-adult ,  atlas-mouse-brain-connectivity ,  reference-coordinates ,  anatomy ,  analysis
1 902 April 19, 2019