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Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
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6
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68
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December 10, 2024
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How to get a specimen stack space(volume) from an mouse ISH section dataset or get an actual coodinates of point alignment in reference space?
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1
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29
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Mouse ABC with CCF Coordinates
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2
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281
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2
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32017
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July 22, 2024
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How MERFISH obtained x,y,z coordinates of each cell
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0
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56
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July 9, 2024
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ABC MERFISH cell coordinates magnitude is different from template image section resolution?
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1
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175
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March 4, 2024
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Allen Human Reference Atlas - 3D, 2020 (new!)
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18
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12549
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Mouse brain reference atlases & mapping your own data
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6
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12172
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395
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9
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696
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6
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6047
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September 26, 2022
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CCFv3 annotation: wrong IDs
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1313
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September 22, 2022
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Attempting to Download Substructures for Coronal P56 Mouse Atlas
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5
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2298
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August 20, 2022
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1
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795
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June 21, 2022
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Voxel id in annotation file
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1
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511
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June 16, 2022
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Plotting the visual Neuropixel coordinates in CCF: problem with anterior-posterior alignment
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0
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449
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Access individual axon lengths and their position
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0
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478
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April 27, 2022
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4
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923
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July 12, 2021
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675
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CCFv3 Highlights: Getting Started
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843
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March 9, 2021
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[Brainspan ISH] Atlas Image to Section Image
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1
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672
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February 26, 2021
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Data Analysis for cell detection at adult mouse
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2
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402
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December 21, 2020
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How can I access the brain surface that is used in adult human brain atlas?
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1
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713
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December 21, 2020
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Displaying data in common coordinate framework - CCF reference space
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6
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703
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December 2, 2020
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Missing region IDs
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7
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1212
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September 1, 2020
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Voxel Extraction in Mouse Brain
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1
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861
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August 27, 2020
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CCF rego 2020 competition
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1
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1573
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August 26, 2020
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Image-to-reference for whole section or section dataset?
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1
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588
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August 3, 2020
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