I would like to retrieve the list of
section_images corresponding to a list of reference images for a specific atlas, but I can’t figure out how to do this.
For example, for
138322603 , the pcw 15 developing human atlas, I have selected 4 sections that best represent the areas I am interested in.
In my drawing, these would be images 1:4.
Their section image ids are:
102125611 102125569 102125613 102125599
For a given section dataset, eg.
100135098 (an ISH experiment for SATB2 in 15 pcw) how can I get the sections closest to each of the 4 atlas images?
I tried using the
image_to_image function but get an empty response.
section_datasets = requests.get("http://api.brain-map.org/api/v2/image_to_image/102125613.json?x=1&y=1§ion_data_set_ids=).json()"
There is an
image_to_atlas function in the AllenSDK but I need the reverse.
I also tried getting the transform values for the section images as suggested in Matching experiment section images with brain segmentation, but no success there either.
# Example API query to get transform values at the SectionImage level: "http://api.brain-map.org/api/v2/data/query.json?criteria=model::SectionImage,rma::criteria,[data_set_id$eq524874308[section_number$eq14],alignment2d,rma::include,alignment2d"
Any help is much appreciated.