anatomy

Topic Replies Views Activity
Creating meshes from volumetric data
Technical
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  allensdk ,  how-to ,  annotation
6 259 June 28, 2020
Allen Human Reference Atlas - 3D, 2020 (new!)
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  human
6 744 June 15, 2020
Human Brain Atlas Mesh Files
Technical
atlas-reference-maps ,  atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  how-to ,  software ,  human
4 163 June 15, 2020
Injection coverage matrix for thalamus
Technical
atlas-mouse-brain-connectivity ,  anatomy ,  experiment-design ,  analysis
8 175 June 11, 2020
Details on human developmental reference atlas - sectioning intervals
Science
atlas-human-brain-developing ,  anatomy ,  experiment-design ,  analysis ,  how-to
3 120 June 8, 2020
Datasets alignment and registration: Was ARA ever re-aligned with the CCFv3 average template?
Technical
atlas-reference-maps ,  atlas-mouse-brain-adult ,  anatomy ,  analysis ,  histology
5 204 June 3, 2020
Extracting data for all genes from an ROI
Technical
atlas-mouse-brain-adult ,  anatomy ,  transcriptomics ,  api ,  how-to
9 189 June 2, 2020
What brain regions are denoted as M1ul/M1lm and S1ul/S1lm?
Transcriptomics Explorer
atlas-cell-types ,  anatomy ,  analysis
2 138 April 27, 2020
Details on the mouse isocortex flatmap: how were the cortical coordinates derived?
Technical
atlas-mouse-brain-adult ,  anatomy ,  analysis ,  software
3 235 March 12, 2020
FAQ: How can I get a printed or PDF version of the [mouse, human brain] reference atlas?
atlas-reference-maps ,  atlas-mouse-brain-adult ,  atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  how-to ,  annotation
1 218 January 23, 2020
Spinal Cord Image Registration
Technical
atlas-mouse-spinal-cord ,  anatomy ,  image-registration ,  annotation
3 188 January 28, 2020
Quantifying Grey Matter to White Matter ratios from images of brain slices
Science
reference-coordinates ,  anatomy ,  human
3 206 January 7, 2020
Histology & Immunohistochemistry: Compendium data available for analyzing the cytoarchitecture of the brain
Show & Tell
atlas-reference-maps ,  anatomy ,  histology
2 273 December 4, 2019
Extracting data from whole cortex+hippocampus transcrip.tome data set
Transcriptomics Explorer
anatomy ,  celltype ,  analysis ,  how-to
2 192 November 19, 2019
Reference atlases for species other than mouse and human
Science
request ,  atlas-reference-maps ,  anatomy
2 230 November 1, 2019
Coordinates to brain structure api
Technical
reference-coordinates ,  anatomy ,  api
3 219 October 28, 2019
Do you have gene expression data for mouse eye?
Science
atlas-mouse-brain-developing ,  anatomy ,  in-situ-hybridization
1 183 October 24, 2019
Identifying whether a branch is dendrite or axon in .swc files
Technical
atlas-cell-types ,  anatomy ,  cell-morphology ,  analysis ,  how-to
3 199 October 23, 2019
Anatomic Structures ISH Survey
Science
atlas-human-brain-glioblastoma ,  anatomy ,  histology
3 181 October 8, 2019
Atlas anatomy terminology and other anatomical notations
Science
atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  human
7 410 July 29, 2019
Wrong annotations
Technical
anatomy ,  analysis ,  annotation
2 276 June 17, 2019
Attempting to Download Substructures for Coronal P56 Mouse Atlas
Technical
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  api ,  how-to
3 498 May 14, 2019
Why doesn't the 3D Mouse Brain Atlas have Bregma coordinates?
Science
atlas-reference-maps ,  atlas-mouse-brain-adult ,  atlas-mouse-brain-connectivity ,  reference-coordinates ,  anatomy ,  analysis
1 1077 April 19, 2019