software

Topic Replies Views Activity
Human Brain Atlas Mesh Files
Technical
atlas-reference-maps ,  atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  how-to ,  software ,  human
2 56 May 28, 2020
Brain Explorer 2 crashing when visualizing human gene data
Technical
request ,  atlas-human-brain-adult ,  brain-explorer ,  bug-report ,  software
7 381 May 27, 2020
Advanced Notice: End-of-life for Allen Brain Explorer (desktop app)
Technical
software
1 25 May 27, 2020
Brain Explorer on Mac Catalina
Technical
brain-explorer ,  bug-report ,  software
2 35 May 27, 2020
3D viewer to view simulations
Science
analysis ,  allensdk ,  how-to ,  software
4 70 May 19, 2020
Can we download a Heat Map or t-SNE visualisation?
Transcriptomics Explorer
atlas-cell-types ,  analysis ,  how-to ,  software
2 43 May 8, 2020
HELP! Jupyter Example Code Abbreviations - Brain Observatory
Technical
brain-observatory-visual-coding ,  api ,  how-to ,  software
2 78 April 20, 2020
CSD: session.get_current_source_density() hanging
Technical
brain-observatory-visual-coding ,  analysis ,  allensdk ,  software
6 120 April 9, 2020
Join us at the *eLife Innovation Sprint 2020*
training ,  workshop ,  software
1 43 April 6, 2020
Creating 3d reference atlas for a P7 mice
Technical
atlas-reference-maps ,  reference-coordinates ,  how-to ,  software
3 101 March 20, 2020
Details on the mouse isocortex flatmap: how were the cortical coordinates derived?
Technical
atlas-mouse-brain-adult ,  anatomy ,  analysis ,  software
3 148 March 12, 2020
Can't open session .nwb files on Matlab or Python
Technical
brain-observatory-visual-coding ,  allensdk ,  software
4 128 March 3, 2020
Developing a brain atlas through deep learning
Show & Tell
atlas-mouse-brain-adult ,  atlas-human-brain-adult ,  analysis ,  software
2 127 February 28, 2020
Multichannels systems spike sorting
Technical
analysis ,  how-to ,  software
2 90 February 21, 2020
A programme to support innovators developing tools for open research
education ,  software
1 124 November 28, 2019
Mouse neurons reconstruction -> CCF alignment
Show & Tell
atlas-mouse-brain-connectivity ,  reference-coordinates ,  python ,  analysis ,  allensdk ,  software
3 229 October 31, 2019
Loading data from transcrip.tome file in Python with h5py
Technical
transcriptomics ,  python ,  analysis ,  software
3 379 October 16, 2019
Missing region IDs
Technical
reference-coordinates ,  analysis ,  how-to ,  software
4 230 September 18, 2019
Got questions about software? Visit AllenSDK on GitHub
github ,  nwb ,  allensdk ,  how-to ,  software
1 159 September 10, 2019
Matlab tool to visualize input output strength of specific brain area
Show & Tell
rave ,  reference-coordinates ,  connectivity ,  analysis ,  software
2 186 September 5, 2019
3d connectivity strength visualization
Technical
atlas-mouse-brain-connectivity ,  analysis ,  software
3 266 September 4, 2019
Is dipde unmaintained?
Site Feedback
models ,  api ,  software
3 232 August 14, 2019
Reproducing Allen CCFv3 (eg downloading mouse brain volumes)
Technical
request ,  atlas-reference-maps ,  atlas-mouse-brain-adult ,  how-to ,  software
5 313 August 8, 2019
AllenSDK 0.16.3 released
allensdk ,  bug-report ,  software
1 251 May 24, 2019
AllenSDK 0.16.2 released
Technical
reference-coordinates ,  image-registration ,  allensdk ,  tissuecyte ,  software
1 284 April 26, 2019
Using the the mouse brain reference atlas for cell quantification: example publication
Show & Tell
atlas-reference-maps ,  software ,  publication
1 285 February 26, 2019
RasterMap released as Python package
Show & Tell
python ,  analysis ,  software
1 786 September 7, 2018
Can I use your software to analyze my own data?
Technical
analysis ,  how-to ,  software
1 558 August 3, 2018
How do I access 2-photon calcium movies?
Technical
visual-system ,  analysis ,  allensdk ,  how-to ,  software
2 799 June 13, 2018