Hi All,
I’m interested in finding the prevalence of RNA transcripts in the ABC atlas datasets, and using that to compare to some regional expression data of a certain protein.
I’ve been looking into using the MERFISH datasets from zhuang. In the paper, they mention that regions are annotated, but it doesn’t seem like that data is accessible - I’ve been trying to work back from the xyz coordinates included in the dataset, but that seems to be inaccurate (~10-15% are outside of atlas).
Has anyone tried to do this before, or have any insights?