Anatomical annotation for each cell

Hi everyone.

I was wondering to know how can I use metadate tables to endup having a lable as anatomical annotation for each cell in MERFISH data of WMB. I mean for instance, I want to take cells only from CTXsp and split them from original anndata to a new one.

Any help highly appreciated in advance.

@jeremyinseattle @tylermo Can you please help me with this?

If you use python, I’d suggest starting here at the ABC Atlas GitHub repo: Allen Brain Cell Atlas - Data Access — Allen Brain Cell Atlas - Data Access. If you use R, or need addition info, please let me know and I can provide more information.