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Brian explorer 2
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3
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85
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April 14, 2026
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How to download a small of subset of single-cell multiomics (RNA/ATAC) of a small brain region?
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5
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85
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April 14, 2026
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Histogram for a specific gene on ABC atlas
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2
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13
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April 10, 2026
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Access to raw recordings of 2-photon calcium imaging for studying visual behaviour in mice
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1
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40
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January 12, 2026
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Details about developmental transcriptome (human)
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1
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33
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January 12, 2026
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Assistance needed in using Allen 3D atlas to merge with PET CT
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2
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54
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December 17, 2025
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Group Plot for Basal Ganglia cell types
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3
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57
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December 12, 2025
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Trouble aligning flattened brains to CCFv3
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1
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60
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December 4, 2025
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ISH false discovery rate (fdr)
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0
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37
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October 24, 2025
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Human Brain Atlas Mesh Files
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4
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3203
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October 3, 2025
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Mouse brain reference atlases & mapping your own data
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8
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13489
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September 25, 2025
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Generating Expression Masks De Novo
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1
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71
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August 21, 2025
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Downloading gene expression data for the different mouse brain regions (expressed/not expressed) as a list
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2
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133
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August 18, 2025
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Registering partial 2D IHC images to Allen Brain Atlas using QuickNII
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2
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119
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August 16, 2025
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Trouble Download xml file from ISH Differential search results
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4
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71
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August 15, 2025
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Differential search (Human Brain)
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4
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642
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August 13, 2025
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Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
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8
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391
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August 13, 2025
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Estimate location of brain sagittal or coronal slice
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1
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167
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August 12, 2025
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Batch download: Developing mouse brain
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8
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156
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August 11, 2025
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Extracting data for all genes from an ROI
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10
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1997
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August 4, 2025
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Metadata/Publication for SMART-Seq v4 DFC M1C Dataset
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1
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73
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July 29, 2025
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Anyone familiar with studies on consciousness in computational neuroscience?
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1
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85
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May 27, 2025
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Accessing putative cell type in neuropixel dataset
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9
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1333
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April 24, 2025
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Is there a cell type taxonomy of mouse in the hippocampus?
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4
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121
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March 20, 2025
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Downloading full resolution images using AllenSDK
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5
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241
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February 24, 2025
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Neocortex and SATB2 expression
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1
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54
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February 14, 2025
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Artificial Brain generation copycat from a normnal brain possible?
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2
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74
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February 7, 2025
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Identifying the cell type based on cluster_name
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1
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122
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January 13, 2025
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How to plot an annotation slice map with solid boundaries and transparent filling for the interior?
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2
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124
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January 10, 2025
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How to download images from the Ivy Glioblastoma Atlas Project
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3
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2549
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January 7, 2025
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