I want to use the Allen Merfish data for spatial analysis, what are the units of the x_reconstructed and y_reconstructed data? A typical section is around 6x6 units in x and y, seems too small to be mm or micron. I need the conversion factor to microns in order to set the cell cell interaction distance properly. Many thanks.
Hi,
Thank you for your patience. The original coordinates are here (center_x and center_y in microns): s3://mouse-dev-wg-802451596237-us-west-2/CO_processed_datasets/mouse_638850/abc_atlas_section_coords.csv (CO ID = f6695d6d-1fd8-4ffd-9276-798633bcb71f).
Please let us know if you have any other questions.
Lauren