|
Issue with the CCF parcellation index in the Zhuang-ABCA dataset
|
|
2
|
21
|
January 28, 2026
|
|
Allen Human Reference Atlas - 3D, 2020 (new!)
|
|
20
|
15451
|
December 12, 2025
|
|
Finding prevalence of transcripts in specific regions
|
|
0
|
55
|
October 9, 2025
|
|
Human Brain Atlas Mesh Files
|
|
4
|
3180
|
October 3, 2025
|
|
Mouse brain reference atlases & mapping your own data
|
|
8
|
13438
|
September 25, 2025
|
|
Troubleshooting ccf_streamlines: bregma on the TOP view (CCFv3, 10 µm)
|
|
3
|
70
|
September 5, 2025
|
|
Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
|
|
8
|
373
|
August 13, 2025
|
|
What's the difference between x_reconstructed and x_ccf
|
|
1
|
54
|
August 11, 2025
|
|
Entorhinal stereotactic coordinate mismatch
|
|
3
|
127
|
May 7, 2025
|
|
有什么好的方法,可以确定小鼠视觉皮层相对与小鼠的前囟的位置呢?
|
|
1
|
110
|
April 16, 2025
|
|
How to get a specimen stack space(volume) from an mouse ISH section dataset or get an actual coodinates of point alignment in reference space?
|
|
1
|
76
|
November 1, 2024
|
|
Mouse ABC with CCF Coordinates
|
|
2
|
377
|
August 21, 2024
|
|
Allen Mouse CCF - accessing and using related data and tools
|
|
2
|
50917
|
July 22, 2024
|
|
How MERFISH obtained x,y,z coordinates of each cell
|
|
0
|
109
|
July 9, 2024
|
|
ABC MERFISH cell coordinates magnitude is different from template image section resolution?
|
|
1
|
216
|
March 4, 2024
|
|
Uploading pretrained scvi model on the SEA-AD Reference to the Hugging Face scvi-hub
|
|
2
|
443
|
May 18, 2023
|
|
Projecting mouse connectivity to the cortical surface
|
|
9
|
797
|
December 21, 2022
|
|
How to switch between the 3 coordinate systems of Mouse Connectivity?
|
|
6
|
7124
|
September 26, 2022
|
|
CCFv3 annotation: wrong IDs
|
|
4
|
1463
|
September 22, 2022
|
|
Attempting to Download Substructures for Coronal P56 Mouse Atlas
|
|
5
|
2461
|
August 20, 2022
|
|
Some questions about Mouse Brain Atlas in Brain Explorer 2
|
|
1
|
902
|
June 21, 2022
|
|
Voxel id in annotation file
|
|
1
|
563
|
June 16, 2022
|
|
Plotting the visual Neuropixel coordinates in CCF: problem with anterior-posterior alignment
|
|
0
|
491
|
June 1, 2022
|
|
Access individual axon lengths and their position
|
|
0
|
492
|
April 27, 2022
|
|
Neuropixels data - Electrode (X,Y,Z)
|
|
4
|
1076
|
July 12, 2021
|
|
Tracking mouse gaze on screen clarifications
|
|
2
|
737
|
June 2, 2021
|
|
CCFv3 Highlights: Getting Started
|
|
1
|
2264
|
April 7, 2021
|
|
CCFv3 Highlights: "Tilting at the cortex"
|
|
3
|
3925
|
March 21, 2021
|
|
CCFv3 Highlights: Transgene Expression Data
|
|
0
|
896
|
March 9, 2021
|
|
[Brainspan ISH] Atlas Image to Section Image
|
|
1
|
721
|
February 26, 2021
|