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Allenbrain-mcp — MCP server wrapper for Allen Brain Atlas API (RMA + downloads)
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0
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29
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February 25, 2026
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Programmatic download of human ISH - issues with allensdk
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1
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29
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February 13, 2026
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Question on PatchSeq jupyter example
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10
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4054
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October 22, 2025
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Batch download: Developing mouse brain
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8
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146
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August 11, 2025
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Extracting data for all genes from an ROI
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10
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1983
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August 4, 2025
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Getting structure masks for fine substructures
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4
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122
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July 6, 2025
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Programmatically accessing Human ISH
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2
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93
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May 20, 2025
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Difference between data from the AllenSDK and the webpage
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1
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283
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May 19, 2025
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Is human microarray expression service down/deprecated?
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4
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93
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January 9, 2025
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How to download images from the Ivy Glioblastoma Atlas Project
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3
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2536
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January 7, 2025
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Human.brain-map.org can't be reached
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4
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82
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December 4, 2024
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Error downloading images via Atlas ID
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0
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50
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December 3, 2024
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Problem on accessing NWB files in BrainObservatory Cache
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5
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109
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December 3, 2024
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How to get a specimen stack space(volume) from an mouse ISH section dataset or get an actual coodinates of point alignment in reference space?
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1
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74
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November 1, 2024
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Discrepancies between connectivity data retrieved via API (allenSDK) and the web portal
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0
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150
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October 16, 2024
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API issue with oapi.get_structures_with_sets?
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5
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341
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July 19, 2024
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Finding mouse info (age, sex, strain, genotype etc)
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3
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130
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June 25, 2024
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Connectivity Synaptic Physiology API -- How to access raw electrophysiology signal data
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1
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187
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May 8, 2024
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Accessing directory of SectionImage
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0
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117
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April 4, 2024
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Human Reference Atlas Right Hemisphere
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2
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657
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March 8, 2024
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Is it possible to pull data into Google Cloud Storage from AllenSDK API directly from a cloud notebook instance?
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1
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348
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October 9, 2023
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How to construct an API that would contain a white space within the name of a brain structure - SOLVED
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0
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288
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September 10, 2023
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Is the absolute soma depth (in um) available for the neurons in the Cell Types database?
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8
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652
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July 14, 2023
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Is there a way to check which brains have been annotated using the API?
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1
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363
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June 23, 2023
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Differences in Hex Values for Brain Regions Across Different Sources
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0
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337
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June 14, 2023
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API connection issues
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0
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499
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May 20, 2023
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Downlaod recording metadata only
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2
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410
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April 5, 2023
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Trying to get a complete list of all the ISH ID experiments for the mouse brain
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3
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542
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March 16, 2023
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36 reconstructed mouse GABA neurons cannot be accessed
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6
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660
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January 6, 2023
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From SectionDataSetID to Metadata (gene name, age) in Developmental AGEA expression grids
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0
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399
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January 2, 2023
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