I was just wondering how to easily get a complete list of all the ISH ID experiments for the mouse brain.
I have tried different ways through API queries but it is difficult to get the complete list because ID figures go so high. I did not find this information in the documentation as well.
Could you please help me to get such a list?
Many thanks in advance,
You can get the full list of ISH mouse experiments by slightly modifying one of the examples that is listed in this page:
Specifically, they provide this particular query to get all the ISH mouse experiments in csv format:
This will get you the first 50 experiments, which is the default if you omit the
num_rows=50 option. You can change that to
num_rows=all to get the full list of experiments (26079, in this case).
I hope this helps.
Excellent, that was exactly what I was looking for!
I am very grateful for your help, which will make me save a lot of time and ressources!
Just a quick note about the list of experiments you provide through this command. It seems that one ID appears twice in a row in this list: ID 78153149 at positions 24785 and 24786. This would give a total number of 26078 experiments.
Hope it could be useful.