|
Cheat sheet for annotation?
|
|
7
|
728
|
April 2, 2026
|
|
Variables in the XML file (brain connectivity)
|
|
2
|
48
|
March 27, 2026
|
|
GPi = EPN in mouse brain atlas?
|
|
2
|
55
|
January 19, 2026
|
|
The meaning of the y/z value of the electrodes in the Allen neuropixel dataset
|
|
1
|
20
|
December 18, 2025
|
|
Assistance needed in using Allen 3D atlas to merge with PET CT
|
|
2
|
60
|
December 17, 2025
|
|
Allen Human Reference Atlas - 3D, 2020 (new!)
|
|
20
|
15833
|
December 12, 2025
|
|
Color duplicates in reference atlas images
|
|
4
|
105
|
December 1, 2025
|
|
Human Brain Atlas Mesh Files
|
|
4
|
3231
|
October 3, 2025
|
|
Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact input data required for this process?
|
|
8
|
410
|
August 13, 2025
|
|
Estimate location of brain sagittal or coronal slice
|
|
1
|
184
|
August 12, 2025
|
|
Extracting data for all genes from an ROI
|
|
10
|
2018
|
August 4, 2025
|
|
Getting structure masks for fine substructures
|
|
4
|
133
|
July 6, 2025
|
|
Mouse reference atlas areas volume
|
|
2
|
322
|
June 5, 2025
|
|
Anatomical Divisions defined on Brain atlas
|
|
1
|
212
|
May 7, 2025
|
|
Why The Edge of MEC and LEC different between Allen Atlas and Paxinos Stereotaxic Coordinates?
|
|
2
|
124
|
February 18, 2025
|
|
A question about the morphological data processing in "Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells."
|
|
0
|
41
|
October 25, 2024
|
|
Mouse spinal cord reference atlas: How to get stacks and vector graphics for registration
|
|
11
|
535
|
September 5, 2024
|
|
Create 3D images?
|
|
4
|
688
|
June 28, 2024
|
|
Is there a way to map sulci/gyri based on the Destrieux atlas to more functional areas (e.g. dorsolateral prefrontal cortex)?
|
|
1
|
143
|
April 2, 2024
|
|
Relative size of microarray samples compared to cortical ribbon
|
|
2
|
384
|
February 23, 2024
|
|
Code to visualize neuropixel probe trajectories from the visual behaviour dataset?
|
|
6
|
521
|
January 26, 2024
|
|
Layer-wise differences in Mouse Reference Atlas Entorhinal Area vs Isocortex
|
|
0
|
218
|
December 4, 2023
|
|
Assistance Needed with Ordering Mouse Brain Regions Anterior to Posterior via API
|
|
1
|
268
|
December 4, 2023
|
|
What is the meaning of atlas_id and st_level in 1.json?
|
|
5
|
1181
|
December 4, 2023
|
|
Identifying whether a branch is dendrite or axon in .swc files
|
|
4
|
883
|
November 27, 2023
|
|
Neuron Population Density Amongst Regions (Stereology)
|
|
0
|
321
|
June 15, 2023
|
|
Differences in Hex Values for Brain Regions Across Different Sources
|
|
0
|
352
|
June 14, 2023
|
|
Save image error in Jupyter notebook tutorial for Layer 2/3 EM images
|
|
4
|
408
|
May 8, 2023
|
|
Violation of SWC spec in at least three files
|
|
2
|
506
|
February 2, 2023
|
|
Is there a way to download mouse brain connectivity strength matrices?
|
|
1
|
510
|
January 20, 2023
|