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Discrepancies between connectivity data retrieved via API (allenSDK) and the web portal
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1
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165
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March 25, 2026
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Mouse Connectivity Projection Density Units
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2
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436
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October 30, 2025
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Difference between data from the AllenSDK and the webpage
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1
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293
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May 19, 2025
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Entorhinal stereotactic coordinate mismatch
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3
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135
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May 7, 2025
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Problems Downloading Mouse Brain Atlas Fiber Tract Data (ID: 156394513)
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1
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86
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April 3, 2025
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Bregma standard?
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1
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228
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April 3, 2025
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How to get a specimen stack space(volume) from an mouse ISH section dataset or get an actual coodinates of point alignment in reference space?
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1
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76
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November 1, 2024
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Interpreting injection values for higher order stuctyures
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0
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29
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July 15, 2024
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What do the parameters "structure_ids" of mcc.get_structure_unionizes mean?
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1
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186
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March 18, 2024
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Creating a Projection Matrix
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0
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394
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July 24, 2023
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Neuron Population Density Amongst Regions (Stereology)
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0
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320
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June 15, 2023
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Tracer connectivity data between different layers available for the mouse brain?
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2
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1563
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May 15, 2023
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Selecting connectivity data with injection into particular hemisphere
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1
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567
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February 10, 2023
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Is there a way to download mouse brain connectivity strength matrices?
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1
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509
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January 20, 2023
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How do I find the injection hemisphere for a mouse connectivity dataset?
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1
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889
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November 3, 2022
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How to save the downloaded data for the function get_injection_density?
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2
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390
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November 2, 2022
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How to switch between the 3 coordinate systems of Mouse Connectivity?
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6
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7220
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September 26, 2022
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Are there accurate ROIs on the reference histological data experiments ?
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0
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376
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July 22, 2022
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CCFv3 Highlights: Getting Started
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1
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2272
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April 7, 2021
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Why the connectivity paths only have non-zeros density/intensity at the last few entries
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0
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551
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April 6, 2021
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Why the transgenic lines of the same experiment don't match?
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5
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723
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March 26, 2021
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Is the Connectivity lines Information directly measured, or computed from density information?
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2
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797
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March 25, 2021
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How to determine the flow Direction of Mouse Connectivity Data
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2
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816
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February 26, 2021
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How are the edges of the mouse connectivity data drawn in the Brain Explorer?
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1
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776
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February 24, 2021
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Mouse connectivity atlas down?
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2
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616
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December 11, 2020
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A question on the computation of laminar termination patterns in the cortex (Harris et al., 2019)
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1
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543
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November 23, 2020
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Download/generate top-down cortical fluorescence image data
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4
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1203
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October 23, 2020
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Matching experiment section images with brain segmentation
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8
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1075
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September 15, 2020
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Mouse reference atlas: NRRD file header problem, and question on axes
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1
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654
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September 14, 2020
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Mouse_connectivity_cache difference between structures in experiment dataframe
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2
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637
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July 13, 2020
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