A gallery of publications and tools using the Allen Mouse Common Coordinate Framework
Distributed coding of choice, action, and engagement across the mouse brain, Steinmetz et. al. 2019
Mapping Mesoscale Axonal Projections in the Mouse Brain Using A 3D Convolutional Network, Friedmann et. al. 2019
High-throughput mapping of mesoscale connectomes in individual mice, Huang et, al. 2018
Biased connectivity of brain-wide inputs to ventral subiculum output neurons, Wee and MacAskill, 2019
Single-trial neural dynamics are dominated by richly varied movements, Musall et. al. 2019
Visualization and Quantification of Post-stroke Neural Connectivity and Neuroinflammation Using Serial Two-Photon Tomography in the Whole Mouse Brain, Poinsatte et. al. 2019
BrainRender - python library to render 3D anatomical data
Greedy low-rank algorithm for spatial connectome regression, Kürschner et al. 2019
Hierarchical organization of cortical and thalamic connectivity, Harris et. al. 2019
Enhanced and unified anatomical labeling for a common mouse brain atlas. Chon et. al. 2019
Sensory and Behavioral Components of Neocortical Signal Flow in Discrimination Tasks with Short-term Memory. Gallero-Salas et. al. 2020
CellFinder: fully automated 3D cell detection and registration of whole-brain images.
Machine learning analysis of whole mouse brain vasculature. Todorov et al. 2020
Spatiotemporal reﬁnement of signal ﬂow through association cortex during learning. Gilad & Helmchen, 2020
Got a tool or publication you want to share? What other examples are out there? Join in the conversation below!