Transcriptomics Explorer


Topic Replies Views Activity
Extracting data from whole cortex+hippocampus transcrip.tome data set
anatomy ,  celltype ,  analysis ,  how-to
1 346 November 19, 2019
What brain regions are denoted as M1ul/M1lm and S1ul/S1lm?
atlas-cell-types ,  anatomy ,  analysis
1 376 April 27, 2020
How do I find genes that differentiate Cell Types? (differential search)
transcriptomics_explorer
0 229 September 17, 2019
Getting Started: Gene Expression Heatmap
0 215 August 12, 2020
How to set median data in transcriptomics explorer in human datasets?
atlas-human-brain-adult ,  transcriptomics ,  how-to ,  human
8 329 November 3, 2020
Getting Started with the Transcriptomics Explorer

Overview The Transcriptomics Explorer is a browser-based tool for researchers to visualize and analyze scRNA sequencing data and related cell types for both mouse and human. A previous version of this tool - called the …

1 696 September 17, 2019
Citation for Allen scRNAseq Mouse and Human datasets
transcriptomics ,  rna-seq ,  publication
4 348 March 30, 2020
Getting Started: Dataset Sampling Strategy
0 114 August 12, 2020
Is the previous version of the site still available somewhere?
analysis ,  how-to
2 321 January 7, 2020
From electrophysiology to t-types
celltype ,  analysis
2 158 August 7, 2020
How to set median data in transcriptomics explorer in mouse datasets?
atlas-mouse-brain-adult ,  transcriptomics ,  how-to
4 177 July 12, 2020
Non-anonymized BAM files
transcriptomics ,  analysis ,  how-to ,  rna-seq ,  human ,  alzheimers
1 251 March 26, 2020
Can we download a Heat Map or t-SNE visualisation?
atlas-cell-types ,  analysis ,  how-to ,  software
1 220 May 8, 2020
Human dopaminergic neurons
atlas-cell-types ,  atlas-human-brain-adult ,  transcriptomics ,  celltype ,  analysis
2 155 November 12, 2020
How to convert scRNA gene names to common gene IDs?
analysis
2 123 October 8, 2020
Can I map my own data to these data sets?
transcriptomics_explorer
0 209 September 17, 2019
How do I find marker genes for a Cell Type or Cell Set?
transcriptomics_explorer
0 206 September 17, 2019
Transcriptomic explorere missing information?
atlas-cell-types ,  transcriptomics ,  analysis ,  how-to
1 143 October 21, 2020
What datasets are available in the Transcriptomics Viewer?
0 202 September 3, 2019
Reconstructing the dendrogram shown in the transcriptomics explorer with R based on the .json file
transcriptomics ,  analysis ,  how-to ,  software
1 141 October 27, 2020
Supported browsers
0 187 February 7, 2020
PKM Splice Variants
transcriptomics ,  rna-seq
1 121 November 26, 2020
Does Allen brain provide user open source to build transcriptomics explorer?
1 121 July 24, 2020
Is there a way to associate median-cluster cell type aliases with their structure ids?
atlas-cell-types ,  anatomy ,  how-to
2 94 May 4, 2021
Metadata of mouse whole cortex and hippocampus 10x data set
1 115 October 15, 2020
Getting Started: Scatterplot (tSNE or UMAP)
0 157 August 12, 2020
List of Cell-Type and/or Cluster Markers
transcriptomics ,  celltype ,  analysis ,  how-to
1 65 May 3, 2021
New Genome Browser views for single cell/nucleus transcriptomics!
celltype ,  rna-seq
0 79 January 13, 2021