Transcriptomics Explorer


Topic Replies Views Activity
Extracting data from whole cortex+hippocampus transcrip.tome data set
anatomy ,  celltype ,  analysis ,  how-to
1 392 November 19, 2019
What brain regions are denoted as M1ul/M1lm and S1ul/S1lm?
atlas-cell-types ,  anatomy ,  analysis
1 437 April 27, 2020
Getting Started: Gene Expression Heatmap
0 285 August 12, 2020
How do I find genes that differentiate Cell Types? (differential search)
transcriptomics_explorer
0 264 September 17, 2019
How to set median data in transcriptomics explorer in human datasets?
atlas-human-brain-adult ,  transcriptomics ,  how-to ,  human
8 379 November 3, 2020
Getting Started with the Transcriptomics Explorer

Overview The Transcriptomics Explorer is a browser-based tool for researchers to visualize and analyze scRNA sequencing data and related cell types for both mouse and human. A previous version of this tool - called the …

1 754 September 17, 2019
Citation for Allen scRNAseq Mouse and Human datasets
transcriptomics ,  rna-seq ,  publication
4 410 March 30, 2020
Getting Started: Dataset Sampling Strategy
0 150 August 12, 2020
Is the previous version of the site still available somewhere?
analysis ,  how-to
2 355 January 7, 2020
From electrophysiology to t-types
celltype ,  analysis
2 194 August 7, 2020
Metadata of mouse whole cortex and hippocampus 10x data set
6 206 September 8, 2021
How to set median data in transcriptomics explorer in mouse datasets?
atlas-mouse-brain-adult ,  transcriptomics ,  how-to
4 212 July 12, 2020
Non-anonymized BAM files
transcriptomics ,  analysis ,  how-to ,  rna-seq ,  human ,  alzheimers
1 301 March 26, 2020
Can we download a Heat Map or t-SNE visualisation?
atlas-cell-types ,  analysis ,  how-to ,  software
1 270 May 8, 2020
Human dopaminergic neurons
atlas-cell-types ,  atlas-human-brain-adult ,  transcriptomics ,  celltype ,  analysis
2 189 November 12, 2020
Reconstructing the dendrogram shown in the transcriptomics explorer with R based on the .json file
transcriptomics ,  analysis ,  how-to ,  software
1 197 October 27, 2020
Transcriptomic explorere missing information?
atlas-cell-types ,  transcriptomics ,  analysis ,  how-to
1 193 October 21, 2020
How to convert scRNA gene names to common gene IDs?
analysis
2 154 October 8, 2020
PKM Splice Variants
transcriptomics ,  rna-seq
1 178 November 26, 2020
Can I map my own data to these data sets?
transcriptomics_explorer
0 237 September 17, 2019
How do I find marker genes for a Cell Type or Cell Set?
transcriptomics_explorer
0 235 September 17, 2019
Is there a way to associate median-cluster cell type aliases with their structure ids?
atlas-cell-types ,  anatomy ,  how-to
2 135 May 4, 2021
What datasets are available in the Transcriptomics Viewer?
0 230 September 3, 2019
Supported browsers
0 216 February 7, 2020
Does Allen brain provide user open source to build transcriptomics explorer?
1 146 July 24, 2020
Getting Started: Scatterplot (tSNE or UMAP)
0 206 August 12, 2020
CPM normalization of 10X mouse single-cell RNA-seq
2 109 August 25, 2021
List of Cell-Type and/or Cluster Markers
transcriptomics ,  celltype ,  analysis ,  how-to
1 104 May 3, 2021
New Genome Browser views for single cell/nucleus transcriptomics!
celltype ,  rna-seq
0 113 January 13, 2021