Transcriptomics Explorer


Topic Replies Views Activity
What brain regions are denoted as M1ul/M1lm and S1ul/S1lm?
atlas-cell-types ,  anatomy ,  analysis
2 173 April 27, 2020
Getting Started with the Transcriptomics Explorer

Overview The Transcriptomics Explorer is a browser-based tool for researchers to visualize and analyze scRNA sequencing data and related cell types for both mouse and human. This product is an active area of development…

2 471 September 17, 2019
Is the previous version of the site still available somewhere?
analysis ,  how-to
3 231 January 7, 2020
How to set median data in transcriptomics explorer in human datasets?
atlas-human-brain-adult ,  transcriptomics ,  how-to ,  human
7 129 September 16, 2020
Citation for Allen scRNAseq Mouse and Human datasets
transcriptomics ,  rna-seq ,  publication
5 150 March 30, 2020
Extracting data from whole cortex+hippocampus transcrip.tome data set
anatomy ,  celltype ,  analysis ,  how-to
2 202 November 19, 2019
From electrophysiology to t-types
celltype ,  analysis
3 90 August 7, 2020
How to set median data in transcriptomics explorer in mouse datasets?
atlas-mouse-brain-adult ,  transcriptomics ,  how-to
5 91 July 12, 2020
How do I find genes that differentiate Cell Types? (differential search)
transcriptomics_explorer
1 169 September 17, 2019
Non-anonymized BAM files
transcriptomics ,  analysis ,  how-to ,  rna-seq ,  human ,  alzheimers
2 117 March 26, 2020
How do I find marker genes for a Cell Type or Cell Set?
transcriptomics_explorer
1 157 September 17, 2019
Can I map my own data to these data sets?
transcriptomics_explorer
1 153 September 17, 2019
Can we download a Heat Map or t-SNE visualisation?
atlas-cell-types ,  analysis ,  how-to ,  software
2 107 May 8, 2020
What datasets are available in the Transcriptomics Viewer?
1 147 September 3, 2019
Supported browsers
1 108 February 7, 2020
Does Allen brain provide user open source to build transcriptomics explorer?
2 63 July 24, 2020
Getting Started: Gene Expression Heatmap
1 61 August 12, 2020
Getting Started: Scatterplot (tSNE or UMAP)
1 43 August 12, 2020
Getting Started: Dataset Sampling Strategy
1 39 August 12, 2020