Transcriptomics Explorer


Topic Replies Views Activity
Extracting data from whole cortex+hippocampus transcrip.tome data set
anatomy ,  celltype ,  analysis ,  how-to
1 430 November 19, 2019
What brain regions are denoted as M1ul/M1lm and S1ul/S1lm?
atlas-cell-types ,  anatomy ,  analysis
1 523 April 27, 2020
Getting Started: Gene Expression Heatmap
0 353 August 12, 2020
How do I find genes that differentiate Cell Types? (differential search)
transcriptomics_explorer
0 285 September 17, 2019
How to set median data in transcriptomics explorer in human datasets?
atlas-human-brain-adult ,  transcriptomics ,  how-to ,  human
8 420 November 3, 2020
Getting Started with the Transcriptomics Explorer

Overview The Transcriptomics Explorer is a browser-based tool for researchers to visualize and analyze scRNA sequencing data and related cell types for both mouse and human. A previous version of this tool - called the …

1 838 September 17, 2019
Citation for Allen scRNAseq Mouse and Human datasets
transcriptomics ,  rna-seq ,  publication
4 473 March 30, 2020
Getting Started: Dataset Sampling Strategy
0 168 August 12, 2020
Metadata of mouse whole cortex and hippocampus 10x data set
6 270 September 8, 2021
Is the previous version of the site still available somewhere?
analysis ,  how-to
2 395 January 7, 2020
From electrophysiology to t-types
celltype ,  analysis
2 221 August 7, 2020
How to set median data in transcriptomics explorer in mouse datasets?
atlas-mouse-brain-adult ,  transcriptomics ,  how-to
4 236 July 12, 2020
Non-anonymized BAM files
transcriptomics ,  analysis ,  how-to ,  rna-seq ,  human ,  alzheimers
1 356 March 26, 2020
Can we download a Heat Map or t-SNE visualisation?
atlas-cell-types ,  analysis ,  how-to ,  software
1 307 May 8, 2020
Human dopaminergic neurons
atlas-cell-types ,  atlas-human-brain-adult ,  transcriptomics ,  celltype ,  analysis
2 224 November 12, 2020
Reconstructing the dendrogram shown in the transcriptomics explorer with R based on the .json file
transcriptomics ,  analysis ,  how-to ,  software
1 259 October 27, 2020
CPM normalization of 10X mouse single-cell RNA-seq
2 205 August 25, 2021
How to convert scRNA gene names to common gene IDs?
analysis
2 192 October 8, 2020
PKM Splice Variants
transcriptomics ,  rna-seq
1 231 November 26, 2020
Transcriptomic explorere missing information?
atlas-cell-types ,  transcriptomics ,  analysis ,  how-to
1 229 October 21, 2020
Is there a way to associate median-cluster cell type aliases with their structure ids?
atlas-cell-types ,  anatomy ,  how-to
2 167 May 4, 2021
How do I find marker genes for a Cell Type or Cell Set?
transcriptomics_explorer
0 256 September 17, 2019
Can I map my own data to these data sets?
transcriptomics_explorer
0 256 September 17, 2019
What datasets are available in the Transcriptomics Viewer?
0 246 September 3, 2019
Does Allen brain provide user open source to build transcriptomics explorer?
1 166 July 24, 2020
Supported browsers
0 233 February 7, 2020
Getting Started: Scatterplot (tSNE or UMAP)
0 229 August 12, 2020
List of Cell-Type and/or Cluster Markers
transcriptomics ,  celltype ,  analysis ,  how-to
1 151 May 3, 2021
New Genome Browser views for single cell/nucleus transcriptomics!
celltype ,  rna-seq
0 145 January 13, 2021