Is there a way to easily reconstruct the dendrogram shown in the transcriptomics explorer of the “Whole Cortex and Hippocampus 10x” data set with R based on the information stored in the “Taxonomy of clusters” .json file?
Update: I succeeded to reconstruct the dendrogram based on the “Taxonomy of clusters” .json file. While the dendrogram looks correct with regard to labeling and grouping of clusters, the coordinates of the nodes seem to be slightly off (both x and y). I verified my code with another taxonomy .json file from you (http://htmlpreview.github.io/?https://github.com/AllenInstitute/nomenclature/blob/master/scripts/build_annotation_tables.nb.html) and using this .json file everything in the dendrogram seems fine. Is it possible that there are some mistakes in the “Taxonomy of clusters” .json file for the mouse whole cortex and hippocampus 10x data set?