List of Cell-Type and/or Cluster Markers


Is there a way to extract marker genes for each cell-type or cluster, or is it required to download the data and perform differential expression testing offline?


Hi @AndyCGraham. For the “Cell Types Database: RNA-Seq Data” “Explore & Analyze” tools, this is currently possible for human “MTG - SMART-Seq (2018)” and mouse “V1 & ALM - SMART-seq (2018)”, but not yet for more recent data sets. You can find additional posts about the Transcriptomics Explorer (for more recent data sets) in its own Community Forum topic.