Hello,
I would like to use gene_matrix_cvs and perform some analysis using edgR, which requires raw expression matrix.
Is it possible to obtain the gene_matrix_cvs in raw counts instead of rpkm?
Kind regards
Hi @Daria. The short answer is we don’t have count data – you can read some more about why in a related post. Raw data for this project is now available on dbGaP, and you could potentially reproduce it that way.