Hey, I am noticed that the probes in the microarray data I downloaded from the All-Br-Atl can cover the same gene. I know that the Probes.csv table shows the level of expression of the genes based on the probe, but I cant find any info on the efficacy of each probe. For example. Probe Id, Gene ID, …

edit: Probe Id, Gene ID, frontal lobe, orbital part 1049352, ADAM23,0.3125,0.4084,0.452, 1049353,ADAM23,0.877,0.9301, NIH used to have a probe database, and its still up for download, but I cant get any efficacy data. Currently I am looking at .sts files with gene locations. Looks like this. |…

https://ftp.ncbi.nih.gov/pub/ProbeDB/legacy_unists/ Here is the probe DB

Different Probes, Same Gene

Technical

jeremyinseattle August 29, 2022, 6:23pm 4

I don’t have a specific answer for your question (maybe others do?); however, we did perform an RNA-seq experiment to try and address the differences in results for probes of the same gene. See the response to this post.

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Different Probes, Same Gene

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