In the IVY GAP RNAseq data, I have downloaded and checked the spreadsheets for what I believe to be all of the Leading Edge and Pseudopalisading differential expression data, and all of the MRI coordinates appear to be -1, which I understand to mean there is no MRI coordinate data for the dataset. D…

Dear AustinKunch, The Ivy GAP does not have any data based on region, ISH, tissue block, or LMD-RNA-Seq sample that is tied to MRI coordinates. In other Allen Institute atlases, -1 is typically used to represent coordinates with no data (e.g., locations with no anatomical coordinates). There are …

MRI coordinates of IVY GAP RNAseq data

Technical

jeremyinseattle March 2, 2022, 1:50am 4

Please see this response. Thanks!

Topic		Replies	Views
Do the MRI images match spatially with the resected tumor which cut into tissue blocks in Ivy GAP glioblastoma database? Science atlas-human-brain-adult	4	848	February 18, 2022
API for Ivy Glioblastoma Atlas Project Ivy Glioblastoma Atlas Project	0	389	February 5, 2024
Access to unfiltered BAM and IDH mutation status for IvyGap Science atlas-human-brain-glioblastoma , experiment-design , analysis , how-to , rna-seq	1	1037	September 6, 2019
Control dataset for Ivy Glioblastoma data Technical atlas-human-brain-glioblastoma , rna-seq	1	302	January 20, 2023
What is the Z score reference value in RNAseq GBM data? Science atlas-human-brain-glioblastoma , transcriptomics , analysis , rna-seq , cancer	3	3219	April 15, 2020

MRI coordinates of IVY GAP RNAseq data

Related topics