In the IVY GAP RNAseq data, I have downloaded and checked the spreadsheets for what I believe to be all of the Leading Edge and Pseudopalisading differential expression data, and all of the MRI coordinates appear to be -1, which I understand to mean there is no MRI coordinate data for the dataset. D…

Dear AustinKunch, The Ivy GAP does not have any data based on region, ISH, tissue block, or LMD-RNA-Seq sample that is tied to MRI coordinates. In other Allen Institute atlases, -1 is typically used to represent coordinates with no data (e.g., locations with no anatomical coordinates). There are …

MRI coordinates of IVY GAP RNAseq data

Technical

jeremyinseattle March 2, 2022, 1:50am 4

Please see this response. Thanks!

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MRI coordinates of IVY GAP RNAseq data

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