Negative log Fold Change genes from Ivy GBM atlas

[jeremyinseattle]

There was a recent post addressing normalization that touched on this topic for a different atlas. In short, it as a matter of website design. The website only shows genes the are overexpressed in the target vs the contrast structure. To see genes higher in the contrast structure, you need to click the double circle arrow icon to the right of the target structure, which switches the target and contrast and is equivalent to finding downregulated genes.