Distinguish Cortex and Hippocampal cells from Yao et al 2021

1

Hello,

Regarding the raw data corresponding to A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation - PubMed available at
NeMO Data Archive Assets

I have downloaded this and converted it into Seurat-compatible format. I would like to figure out which cells correspond to the isocortex vs hippocampus.

Any pointers for where I will be able to parse this out will be very helpful!

Thanks in advance and best regards,

Vivek

2

You can check the Nemo DBbag
https://assets.nemoarchive.org/dat-jb2f34y
In the “Analysis” tab, you can find all the relevant meta data, cluster calls and region labels.
You can also find the same information from our website:
https://portal.brain-map.org/atlases-and-data/rnaseq/mouse-whole-cortex-and-hippocampus-10x
https://portal.brain-map.org/atlases-and-data/rnaseq/mouse-whole-cortex-and-hippocampus-smart-seq