Hi everyone,
I’m working with the Visual Coding 2P data, and I’m interested in understanding what methods and calculations were used to derive the provided neuropil traces. So far, I haven’t been able to find any details in the technical whitepapers or in other documentation online. If anyone could point me towards relevant resources or share insights on this process, I would greatly appreciate it.
Thank you!
This is documented in the Visual Coding Overview white paper that can be found here (Documentation: Brain Observatory) as well as in the Methods section of our platform paper found here: A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex | Nature Neuroscience
Good luck!
Thank you so much! Just to be absolutely certain: the neuropil corrected traces are obtained by get_corrected_fluorescence, and neuropil is obtained by get_neuropil?