How can I utilize Allen Brain Atlas data to annotate and map GABAergic neurons identified in my single-nucleus RNA-seq dataset to specific brain subregions?
Hi @realshyshy,
Thank you for your interested in the Allen Brain Atlas. There is currently not a way to directly map snRNA-seq data to spatial locations, however there are several options for how to do this indirectly. Please see this community forum post for more details. If that doesn’t address your question, feel free to post again on either thread.
Best,
Jeremy