Documentation: Mouse Connectivity Atlas

Document Description
Overview Technical whitepaper describing the Projection Mapping studies
Retinal Projectome Technical whitepaper describing the Retinal Projectome Mapping studies
Informatics Data Processing Design and implementation of the Connectivity Informatics Data Pipeline (IDP)
BDA vs. rAAV Technical whitepaper describing the comparative studies between BDA and rAAV tracing methods
Reference Dataset Technical whitepaper describing the generation of the reference datasets
Mouse CCF, Reference Atlas, Version 3 (2017) Overview of the design and implementation of the Allen Mouse Common Coordinate Framework
Transgenic Characterization Technical whitepaper describing the various characterization studies
Resources A complete list of driver and reporter mice and viruses used in the Allen Mouse Brain Connectivity Atlas projectome data, Transgenic Characterization, and Allen Cell Types Database
Acknowledgements Recognition of collaborators and others who provided assistance