I was writing to ask about how we might obtain a full gene expression dataset for a handful of brain regions from the adult mouse (e.g. the DR and PAG).
We’re interested in getting data by anatomical region as opposed to voxel. Because the ABA interface already permits looking at differentially expressed genes between regions, it would be great if we could obtain the data used as the basis for that tool. My understanding is that the API does have quantified data by structure that we can access.
This information would be incredibly valuable to us. For instance, we’d want to leverage the expression data to refine the way we classify cell types in single-cell RNA sequencing.