Hello there! Thank you very much for providing this excellent database and tools to work with. I am currently trying to recreate your tSNE plots from the human scRNA-seq data for 7 specific genes. I created the plots using the tSNE coordinates provided by you and trying to incorporate the read coun…

Extracting RNA-count data for specific genes from expression matrix

jeremyinseattle April 15, 2020, 4:15pm 2

Hi @A_Muc. The recommended way to read this file using R is written in the .readme. In particular, the read_tome_gene_data function in the scrattch.io R package will be useful. If you prefer using python, please see this forum post.

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Extracting RNA-count data for specific genes from expression matrix

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