Hello everyone, I would like to ask how to download or generate the dorsal projection of the mouse universal coordinate frame, like the one below

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Hello everyone, I would like to ask how to download or generate the dorsal projection brain area data of the mouse general coordinate framework, roughly like the picture below, for subsequent ROI data analysis?

image
image938×831 213 KB

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Hi,

Thank you for your question. One of our scientific team members has the following information for you: Take a look at the ccf-streamlines package. Attaching the read-the-docs at the link below.

I use this codebase to project ccf-registered morphologies into the 2d “slab views” as we call them. The documentation for this package is pretty robust and think should contain enough information to get them going in the right direction.

https://ccf-streamlines.readthedocs.io/en/latest/index.html

Thank you