Histology slice alignment tool [Python]

Technical
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1

Hello everyone,

Does anyone know of a python package to align mouse brain histological images to the CCF?
Something similar to this, but in python: https://github.com/petersaj/histology.

Thank you,
Federico

2

Hi Federico,

Thanks for your question. You may want to take a look at: Mouse brain reference atlases & mapping your own data

Hopefully that will provide a useful starting point!

Best,

Nick

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