When using the interactive tool ‘comparative transcriptomics viewer’ for the SEA-AD dataset, is it possible to get numeric data, i.e. in the form of tables, especially, when viewing gene expression differences (example: https://sea-ad-single-cell-profiling.s3.amazonaws.com/MTG/RNAseq/pseudoprogression-plots/APOE/overview_subclass_supertype.svg)?
Our group is primarily interested in an exploratory data analysis of the differential gene expression during disease progression of a certain family of genes, and would therefore just need a rough overview to assess, whether a detailed analysis is adequate. Thanks for any help!
Hi @JMF,
Thanks for your interest in these tools. All of the statistics for the “Gene Expression Trajectory Viewer” (of which your plot above is one example) is available on AWS in the “pseudoprogression-plots” folder above. This file matches the statistics shown, while this more recent file includes APOE as a covariate in the statistics. More generally, the parent AWS bucket includes all of the processed gene expression and epigenetics data, and all other available data/metadata downloads are listed on our website. Let us know if you need anything else.
Best,
Jeremy