I would like to obtain fastQ files for the M1 10X reference to map it to an updated reference geneome. By navigating the links to data provided in the original paper, I found some fastQ files here:
However, I do not know if these are for the M1 10X dataset.
Hi Dan,
I know we spoke about this offline in an email thread but I am going to add a response here in case other users have a similar question.
The NeMO directory you referenced is actually a link to a macaque dataset. NeMO is working to compile all of our .fastq files and analysis files into a downloadable bdbag object, but this is not complete yet. For now, you may find the file paths to the .fastq files at the below link.
https://github.com/AllenInstitute/BICCN_M1_Evo/blob/master/NeMO_location_all_species_FINAL.xlsx.
best,
Nik