Hi,
We conducted single nuclei RNA-Seq of hindbrain organoids and now would like to use these data for further this analysis with the question if we could identify that certain cells belong to a particular region (nucleus) in the hindbrain. Does anyone know whether reference data for this are available in human?
Please see An anatomically comprehensive atlas of the adult human brain transcriptome | Nature (Supplemental table 2 has a nice overview of the sampled regions you might be interested in) and the recent single cell RNA-seq preprint of the whole human brain: Transcriptomic diversity of cell types across the adult human brain | bioRxiv
-Rachel
Thanks a lot!
Jens