I am an Undergraduate Student learning how to use API for my research project. One of the issues I have come across is understanding the use of API for differential search. As an example, to attain the details of genes expressed in FOTUgr, I used the below query:
However, comparing the Web Search and the API output, I realised they were not the same. I later discovered that this was due to threshold differences between the web search and the API output. I then tried to match the default thresholds seen in the Web Search URL with the API (adding [threshold1$eq0,50][threshold2$eq1,50] to the above query to match below):
These still output different results.
In the first query, what are the threshold defaults, and how would I represent these results in the Web Search? In the second query, how would I match up that output with the output of the Web Search?