Dear Allen Community,
I have a question which is related to pull information with a differential search of the Mouse Brain Atlas with API. We noticed that while performing differential search there is a cut-off regarding the maximum number of genes that we receive as differential. The cut-off value is 2.000 genes and we were wondering if it’s possible to circumvent this.
The only thing that we could find so far that has the cut-off of 2.000 rows which corresponds to 2.000 genes is the following:
http://api.brain-map.org/api/v2/data/query.xml?criteria=model::Structure,rma::criteria,[name$il'isocortex'],ontology[abbreviation$eq'Mouse'],pipe::list[contrast$eq'id'],model::Structure,rma::criteria,[name$il'thalamus'],ontology[abbreviation$eq'Mouse'],pipe::list[target$eq'id'],service::mouse_differential[set$eqmouse][structures1$eq$contrast][threshold1$eq0,50][structures2$eq$target][threshold2$eq1,50]
However, while setting the num_rows higher than 2.000 we still received only 2.000 genes. Is there a solution for this problem?
Kind regards,
Joy Otten